Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre10g0445 ATGTTGAAGCCTTTTGCATATTCCGTGGTCCGTGACATTATATGGGAGTTGGGGGGGCTGCGTTCATTGAGACACAACCTCCAGAACCCGCTGTTGAAATCCTTTGCTTTCTTTCTCTCTTTCTCTTTAGTTGGGATTTGTGAAGAAGGGCTCTGTTTCAAAAGATCAGAGCCATTGCTTCTCTCTCTAAAGAGGTTGGAGAGAGTTGATTTGGTGCTGAAAAGCGATTTTCCAAAGGGGCTTAGAGTTCTCCTCCTTGATGGAGACAGCAGTTCTGCTGCTGAGATAAAAACAAAGCTTGAGGAAATGGAGTATGTTGTTGTGACTTACTGCAATGAGAATGATGCATTGTCAGCCATTTCAAGCAAACCCGAAACCTTTCATGTTGCCATTGTGGAGGTAACAACAAGTAATCACGACGGGAATTTTAAGTTTCTTGAAGCTGCTAAGGACTTGCCTACCATTATGATTTCAAATATCCATTGCCTAAGCACGATGATGAAGTGCATAGCACTTGGTGCGATCGAGTTCCTTCAGAAACCGCTCTCTGAGGACAAATTGAGGAATATTTGGCAACATGTTGTTCATAAGGCATTCAATGCAGGCGGTAGTCCCGTCCCCAATTCTTTAAAGCCTATTAAAGAATCCGTTGCCTCCATGCTGCATCTAGAATTAGAAAACAGCGAAAACGAGAATCAAATCCAGAAAGAGTTAGAAATATCGAGCCGCAACGATGACAATGATCATGAACTACTAGAAGGAAGTGATAAGTATCCAGCTCCTTCAACTCCTCAGCAGAAGCATGGAATGCGACTAGTGGATGATGGTGACTGCCATGATCAATTGAACAGTTCGCTCGAGAAAGAGTGCGGGGAGCAAGATGGGGAGTCAAAATCTGTCGAAACTACTTGTATCAATTCACTTGGTGAAGGTACTTCTCAAGTGGAGAACTCTCAGTTACCTGACCAAGAAGGAATAAAAGAAGAAGAGAACTCTGCTGATGGTTGTGGGGCTGCGAGTAACATCGATCACGACACACATGATCGAGACAATATTAGCAGTTCCGAAAAAAACAAGAGCAAACCATGCGGTGTCAATAATCCTTGTGGGACAAAAGTTAGTAGGAAGAAGCTGAAGGTAGACTGGACGCCCGAACTGCACCGAAAATTTGTACAGGCAGTAGAACAACTTGGAGTGAATCAAGCAATTCCTTCTCGAATTCTTGAGCTGATGAAAGTTGAAGGCTTGACAAGGCATAATGTAGCAAGCCATCTTCAGAAGTATCGAATGCATAAGAGGCACATCTTGCCAAAAGAAGAAGATGGGAGTTGGTCTCATTCAAAGGATCCAATGAAGAAGAACTACTATCCACAAAGACCCGTGATGGCCTTCCCCCCTCCTTATCATTCAAATCATATAATGCCAGTTGCTCCAATCTACCCGCCGTGGGGTCATATGGCTTGCCCCTCGCCCGGTGTCCAAATGTGGGTGCCACCCGGTTATCCGCCATGGCGACCACCGGAAATTTGGCCATGGAAGTCCTATCCTGGGATGCATGCTGATACATGGGGTTGCCCTGTGACACCACCTCCTCATAGCCCTCTCTCTTCTCATCCTCAACAGCATATTTCAAGATTTGAAAGCACTGATCCGTATGATAAAAGCTACGGCATTGCATTCAGTCCTATCGATCTTCAATTGGCTGATGAAGAAATTGACAAAGTGGTGAAAGAGGCAATCAGCAAGCCATGGTTGCCATTGCCTTTGGGGTTAAAGCCACCTTCAACAGAAAGTGTACTGTCTGAGCTCTCAAGACAAGGCATCTCAACCGTTCCTTCTCACATCAATGGCTCTAAACTACTCCAATGA 1869 44.84 MLKPFAYSVVRDIIWELGGLRSLRHNLQNPLLKSFAFFLSFSLVGICEEGLCFKRSEPLLLSLKRLERVDLVLKSDFPKGLRVLLLDGDSSSAAEIKTKLEEMEYVVVTYCNENDALSAISSKPETFHVAIVEVTTSNHDGNFKFLEAAKDLPTIMISNIHCLSTMMKCIALGAIEFLQKPLSEDKLRNIWQHVVHKAFNAGGSPVPNSLKPIKESVASMLHLELENSENENQIQKELEISSRNDDNDHELLEGSDKYPAPSTPQQKHGMRLVDDGDCHDQLNSSLEKECGEQDGESKSVETTCINSLGEGTSQVENSQLPDQEGIKEEENSADGCGAASNIDHDTHDRDNISSSEKNKSKPCGVNNPCGTKVSRKKLKVDWTPELHRKFVQAVEQLGVNQAIPSRILELMKVEGLTRHNVASHLQKYRMHKRHILPKEEDGSWSHSKDPMKKNYYPQRPVMAFPPPYHSNHIMPVAPIYPPWGHMACPSPGVQMWVPPGYPPWRPPEIWPWKSYPGMHADTWGCPVTPPPHSPLSSHPQQHISRFESTDPYDKSYGIAFSPIDLQLADEEIDKVVKEAISKPWLPLPLGLKPPSTESVLSELSRQGISTVPSHINGSKLLQ 622
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 3420046 3425946 + CrPI670011_10g004450.1 Cre10g0445 509747

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre10g0445 622 MobiDBLite consensus disorder prediction 308 368 - -
Cre10g0445 622 Pfam Myb-like DNA-binding domain 379 429 IPR001005 -
Cre10g0445 622 PANTHER TRANSCRIPTION ACTIVATOR GLK1 71 614 IPR044825 GO:0000976(PANTHER)|GO:0003700(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0045893(InterPro)|GO:0045893(PANTHER)
Cre10g0445 622 MobiDBLite consensus disorder prediction 240 280 - -
Cre10g0445 622 FunFam Two-component response regulator-like APRR2 80 205 - -
Cre10g0445 622 SUPERFAMILY CheY-like 79 197 IPR011006 -
Cre10g0445 622 MobiDBLite consensus disorder prediction 240 255 - -
Cre10g0445 622 SUPERFAMILY Homeodomain-like 375 434 IPR009057 -
Cre10g0445 622 MobiDBLite consensus disorder prediction 341 356 - -
Cre10g0445 622 ProSiteProfiles Response regulatory domain profile. 82 195 IPR001789 GO:0000160(InterPro)
Cre10g0445 622 Gene3D - 81 201 - -
Cre10g0445 622 FunFam Two-component response regulator 373 436 - -
Cre10g0445 622 NCBIfam myb-like DNA-binding domain, SHAQKYF class 377 432 IPR006447 GO:0003677(InterPro)
Cre10g0445 622 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 374 433 IPR017930 -
Cre10g0445 622 Gene3D - 373 435 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre10g0445 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre10g0445 Cre-Chr10:3420046 Cre11g0834 Cre-Chr11:5529015 3.70E-18 dispersed
Cre02g1295 Cre-Chr2:15078172 Cre10g0445 Cre-Chr10:3420046 1.70E-36 transposed
Cre10g0445 Cre-Chr10:3420046 Cre09g1194 Cre-Chr9:14108136 2.40E-126 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g607 . Blo03g00110 . . . Bpe07g00227 . . . Cmo16g01131 . . . . . Cpe14g00895 Cpe05g00201 . . . . . . . Cla10g00185 Cam10g0191 Cec10g0196 Cco10g0198 Clacu10g0195 Cmu10g1040 Cre10g0445 . . . . . . . . . . . . . . . Bma12g00227 . . . . Cma16g01084 . . . . . . . . . . . . . . . . . . . . Chy06g02116 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001240 1 4 1 2 1 2 1 2 2 2 2 2 8 2 2 8 2 2 5 2 3 2 2 2 2 2 2 2 6 1 77
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54477 PF00072 Response_reg 3.20E-07 CL0304 Cre TF