Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre10g0466 ATGGAGAATCGGTATGAGCCATTGAAGGACCTTGGCTCTGGAAATTTTGGAGTTGCTAGGCTCGTTAGAGACAAGAAGACAAACGAACTTGTTGCGGTCAAGTACATTGAGAGAGGGAAGAAGATTGATGAGAAAGTTCAGAGGGAAATCATTAATCATCGATCGTTGCGGCATCCGAACATCATCAGATTCAAGGAGGTCTTCTTAACCCCAACTCATTTAGCCATTGTCATGGAATATGCAGCTGGTGGGGAACTCTTTGGAAGAATATGCAGTGCTGGTCGATTTAGCGAAGATGAGGCAAGATTTTTCTTCCAGCAGCTAATATCCGGAGTCAGCTACTGCCATTCCATGCAAATTTGTCACAGGGATCTGAAATTGGAAAACACACTCTTGGATGGAAGTCCTACACCACAACTTAAGATATGTGACTTTGGTTACTCAAAGTCCGCTTTATTACACTCACAACCGAAATCAACTGTTGGGACACCGGCATATATTGCACCAGAGGTTCTATCGCGGAAGGAGTATGATGGCAAGATTTCAGATGTTTGGTCATGTGGAGTGACATTGTATGTAATGTTGGTTGGAGCATACCCGTTTGAGGATCCCGAAGATCCGAGAAATTTCCGTAAGACGATAGCAAGAATATTGAGTGTTCAATACTCAATACCCGATTATGTACGTGTGTCTGTAGAGTGTCGCAACCTTCTTTCTCGCATATTCGTTGCCAACCCCGCAAAGAGGATCACCATCCAAGAGATAAAACAGCTGCCATGGTTTTTCAAGAACTTGCCAAAGGAGCTCATTGAGATTGAGAAAACTGACTTCAAACAACAAGAACACAACCAACCGTTGCAAAGCGTGGAGGAAATCATGCAGATTGTTCAGGAAGCAATGACACCAGGAGAAGCATCTAAAGTCGGGGACCAAGCGTTGGCCGGAGGATCGGGGCTCGACGATCTGGATGCCGATATAGATTCTGAAGTTGATGTCAGTGGTGATTATGTAACTGCTGTTTGA 1023 44.38 MENRYEPLKDLGSGNFGVARLVRDKKTNELVAVKYIERGKKIDEKVQREIINHRSLRHPNIIRFKEVFLTPTHLAIVMEYAAGGELFGRICSAGRFSEDEARFFFQQLISGVSYCHSMQICHRDLKLENTLLDGSPTPQLKICDFGYSKSALLHSQPKSTVGTPAYIAPEVLSRKEYDGKISDVWSCGVTLYVMLVGAYPFEDPEDPRNFRKTIARILSVQYSIPDYVRVSVECRNLLSRIFVANPAKRITIQEIKQLPWFFKNLPKELIEIEKTDFKQQEHNQPLQSVEEIMQIVQEAMTPGEASKVGDQALAGGSGLDDLDADIDSEVDVSGDYVTAV 340
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 3694379 3697785 + CrPI670011_10g004660.1 Cre10g0466 509768

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre10g0466 340 FunFam Serine/threonine-protein kinase SRK2E 1 80 - -
Cre10g0466 340 SUPERFAMILY Protein kinase-like (PK-like) 3 288 IPR011009 -
Cre10g0466 340 ProSitePatterns Serine/Threonine protein kinases active-site signature. 120 132 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre10g0466 340 PANTHER SERINE/THREONINE KINASE 8 291 - GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0035556(PANTHER)
Cre10g0466 340 ProSiteProfiles Protein kinase domain profile. 5 261 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre10g0466 340 ProSitePatterns Protein kinases ATP-binding region signature. 11 34 IPR017441 GO:0005524(InterPro)
Cre10g0466 340 Pfam Protein kinase domain 5 261 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre10g0466 340 Gene3D Transferase(Phosphotransferase) domain 1 81 268 - -
Cre10g0466 340 Gene3D Phosphorylase Kinase; domain 1 1 80 - -
Cre10g0466 340 CDD STKc_SnRK2 4 260 - -
Cre10g0466 340 FunFam Serine/threonine-protein kinase SRK2E 81 269 - -
Cre10g0466 340 SMART serkin_6 5 261 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre10g0466 K14498 - - csv:101207431 637.106
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g1599 Cre-Chr2:28706488 Cre10g0466 Cre-Chr10:3694379 5.70E-136 dispersed
Cre04g0345 Cre-Chr4:10395234 Cre10g0466 Cre-Chr10:3694379 4.60E-138 dispersed
Cre10g0466 Cre-Chr10:3694379 Cre10g1444 Cre-Chr10:28245196 4.00E-51 dispersed
Cre10g0466 Cre-Chr10:3694379 Cre04g1478 Cre-Chr4:33577679 4.50E-143 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g558 Blo02g01010 . . Bda08g00611 Bpe05g00545 . . . Cmo06g00845 Cmo16g01150 . . . . . Cpe14g00910 . Bhi11g00087 . . . . Mch10g1603 . Cla10g00206 Cam10g0212 Cec10g0217 Cco10g0218 Clacu10g0215 Cmu10g1058 Cre10g0466 . . . . Lsi07g01247 . . Cme06g02518 . . . . . . Bma05g00737 . . . . Cma06g00823 Cma16g01101 . Car16g01042 . . Bhi05g00574 Tan07g1902 . Lac11g2344 Hepe06g1246 . . . . . . . . . . Csa03g00222 Chy06g02099 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000065 7 16 8 7 7 11 10 10 11 8 11 11 10 12 10 9 11 14 10 10 9 6 8 6 7 11 4 12 10 7 283
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64446 PF00069 Pkinase 8.20E-72 CL0016 Cre PK