Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre10g0470 ATGGTAGTCGTTGACTATGATCTCTTCCATTTTGCTCTTTTGCCAACGCTCCGCCCTGATTTCAATGTCCCGGTCCCTGCTCTCGAATTCGAGTATCTGATCGCAATCACCGGAATTAGCATCTGGGTTCGGCAATTCGTCGCCATTTCTCAGATGGGTCGTAAGCCAACTGACCAAGAATCCTCTCGTTTGACTCTTCCGATCTTAGTTTTTGTCGGTCTCATCTCCTGCGCCGCCGTGTACACGCTTCTCCCACTTTTGCTCAGATTAAATGGCGGCGATCCTTCGAAACTTGAATCCTTTACAGTGATTAGAGATGGCGATGGCGGAAATTTGGTAGGAGGGGGAGAGAAATGTTGCAGGGGAATCGAGAATTTGGAGCTTTGGGGACCGGCTGTGAAGTGGGGTTCTGAATTTAAGTTCAATTCCTCCGAGTTGTGTTGTGAGGCTTGTAAAGCTATGTGTAGTGGGAATGATGGGCCTTGCTTGTGTGATACTTGGGTGTATTGTGGAAATCGAGAGGAATGTGGTCCTAAATATGGTGAATGCTGGCTGAAGAAACAGAAGGATACATTGGCTCCTGATCGGCAGGAAGGAGGGACAAGAAGTATTTGGACTTCTGGCATTATCTTCGGAAGAGGAGAAGGAATCGTTGCGCTGGAGACGGATCATGGCACCCTTCATATCAAGCTCTTCCCTGACTGTGCTCCCCATTCAGTTGCTTACATTCTCGAGTTATTGGGATTACGACATTGTGCTGGTTGTCACTTTTACCGTGCAGAGGGTAGAGGGCAATCTTGGGACTCAAAAGGAAACCACATCGAAAATGCTCCTTTAGGTCCTCCTTTTGCACTTGTTCAAGGAACACTGGAATCTCAAGGGATTCAATTTAAGAAGATTCCCACTGAAGTTTGCCCATACATAAAGCGCGGTTCGGTGGCGTGGGTTGGTTCTGGACCAGAATTCTTCATAAGTCTTGCAAACCACCAAGAATGGAACAAAGTGTATACCGTGTTTGGTTCAGTTCTCCCTGAAGACATGGAAATTGCAGAGAAAATTGCTCGACTCCCTACTAAGCCTGACACTTGGAACAACATCAATGTCTCCGTGTTGCAAAAACCCGTGTCATTGCGGTTGAAAAGAATGAAGAAGAGCCATGGAGATCTCAACGTGAAATCAGATTGA 1185 46.75 MVVVDYDLFHFALLPTLRPDFNVPVPALEFEYLIAITGISIWVRQFVAISQMGRKPTDQESSRLTLPILVFVGLISCAAVYTLLPLLLRLNGGDPSKLESFTVIRDGDGGNLVGGGEKCCRGIENLELWGPAVKWGSEFKFNSSELCCEACKAMCSGNDGPCLCDTWVYCGNREECGPKYGECWLKKQKDTLAPDRQEGGTRSIWTSGIIFGRGEGIVALETDHGTLHIKLFPDCAPHSVAYILELLGLRHCAGCHFYRAEGRGQSWDSKGNHIENAPLGPPFALVQGTLESQGIQFKKIPTEVCPYIKRGSVAWVGSGPEFFISLANHQEWNKVYTVFGSVLPEDMEIAEKIARLPTKPDTWNNINVSVLQKPVSLRLKRMKKSHGDLNVKSD 394
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 3720170 3723583 + CrPI670011_10g004700.1 Cre10g0470 509772

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre10g0470 394 Gene3D Hepatocyte Growth Factor 125 211 - -
Cre10g0470 394 PANTHER EXPRESSED PROTEIN 52 386 - -
Cre10g0470 394 SUPERFAMILY Cyclophilin-like 214 370 IPR029000 -
Cre10g0470 394 FunFam Predicted protein 213 376 - -
Cre10g0470 394 Gene3D - 212 375 IPR029000 -
Cre10g0470 394 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 218 370 IPR002130 GO:0000413(InterPro)|GO:0003755(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre10g0470 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre05g0394 Cre-Chr5:3588576 Cre10g0470 Cre-Chr10:3720170 1.10E-120 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g548 . Blo03g00135 Bda06g01307 . Bpe05g00546 Bpe07g00199 . . Cmo06g00844 . . . . . Sed07g0533 . . Bhi11g00085 Tan01g2109 Cmetu06g1674 . Hepe06g1082 Mch10g1601 . Cla10g00208 Cam10g0216 Cec10g0221 Cco10g0221 . . Cre10g0470 . . Cone6ag0632 . Lsi07g01250 . . Cme06g02522 . . . . . . . Bma12g00189 . . . Cma06g00821 . . . . . . . . . . . . . . . . . . . . Csa03g00225 Chy06g02096 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002040 1 3 2 3 3 2 2 2 2 2 2 2 2 2 1 2 2 3 2 2 2 2 2 2 2 3 2 3 2 2 64