Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre10g0478 ATGGGCAAGCAAGGGCCTTGCTATCACTGTGGAGTTACAAGCACACCACTCTGGCGTAATGGCCCTCCTGATAAGCCAGTATTATGCAATGCCTGTGGATCTCGATGGAGGACGAAAGGAACTCTAGCAAACTATACCCCTCTTCATGCTCGAGCGGATCCTGATGAGTATGAGGATAAAAGGATCTCTAGGTGGAAGAACTTGTCAATGTGTAAGAACAAAGAAGTGAAACTGCTTAAAAGAAAACAGTATCAAGATAATGGAGTTGTGGTTGGGGTTATTCCTGATCATGCTCAGAGCTTTCACAAGGCAGTGGATGAAGATACAAGTAATAGATCCAGTTCTGGGTCAGCCATATCGAACTCTGAGAGCTGTGCACAATTTGGTGGTGCAGATGCAAGTGATCTGACAGGTCCCTCGCAGTCAACAGCATGGGAGGCAATAGTGCCTTCTAGAAAGAGGACCTGTGTCGGTCGTCCAAAGTCTACTGCAGTTGAGAAACTCACTAAAGATCTATACACCATTTTACGTGAACAGCAGTCTTACTTCTCTGGATCCTCCGAGGAGGATTTGCTTTTCGAGAATGAAACTCCAATGGTCTCCGTAGAGATAGGACATGGAAGCGTTCTCATGAGGCATCCAAGTTCAATTGCTCGAGAAGAGGAGTCAGAAGCAAGCTCAATTTCAGTTGATAATAAACAATTCTCTGTAAATGAAGTTCATTCAGAGTCGTCCATCCTTCCTGTACATTATGAAACTCAGAACAAGGTTGTAAATTTTTCTACTCTTGGAATTGGGAGAAAGCACTCTATTGGACAGGGGTTCTTGCAAGAGCAAATTAAAAGGGAAAGGCCTCAGTCAGAAAGAATGCAAGCACTTGGAAATCGTAATTCGCCTCTCTGTAATATAGATCTAACTGACATTCTAAACTTCAGAGAGTTTATGAAGCAATTGACGAGTGAGAATCAGCAAGAACTAATGAAGTATCTGCCTTCTGTTGATACTGAAGAACTTCCGGACAGCTTGAATAGCATGTTTGAAAGCCCTCAATTCAAGGAGAATTTGAATTCTTTTAAGCAGCTGCTCACTGAAGGAGTCTTTGATTTCTCCTTTCCGGGTGCAAAAAGAGAAGACTGCAAGACTTTGAGTAGGCTGGTGTTGTTGGATTTGTCAAAATCAAAATGGGTGGAGCGATATCATCTACTCAAGAAATGTAGTAGTGGAGAGTCTGTTCAAGGTTTTGCTGCTGCATCAAGTAGCTTTATGAATGACAAGAGAGTGCTTGATGGCCAAAACAAAAAGCTTTCAGAAACAAGGACTGCAATGAAAAGTCCCAAAAGGGTGATGACAAAGACAAGCGTGGAAAGCAAGGAACTTGTGGACAGCGATGGTTCTTGCTTCAGTCCAAGAAGTTTATTTGCTTTGCCTTCTGATGGTGGTTCCTTCACACTGGAATCTCTGCATTTTGATGAGGATAGTTCTGACCAGGATCTCCTGCTGGATGTGAGGTCAAACAGCTCCTTTCCACAAGCAGAGCTTCTTCATCCACCCCTGAGTTTTGGTGCTCAACAGGCAAGCAATAGTAGTAGCTCGGTAAATCTTCGACTTATGCATCACTGA 1620 43.27 MGKQGPCYHCGVTSTPLWRNGPPDKPVLCNACGSRWRTKGTLANYTPLHARADPDEYEDKRISRWKNLSMCKNKEVKLLKRKQYQDNGVVVGVIPDHAQSFHKAVDEDTSNRSSSGSAISNSESCAQFGGADASDLTGPSQSTAWEAIVPSRKRTCVGRPKSTAVEKLTKDLYTILREQQSYFSGSSEEDLLFENETPMVSVEIGHGSVLMRHPSSIAREEESEASSISVDNKQFSVNEVHSESSILPVHYETQNKVVNFSTLGIGRKHSIGQGFLQEQIKRERPQSERMQALGNRNSPLCNIDLTDILNFREFMKQLTSENQQELMKYLPSVDTEELPDSLNSMFESPQFKENLNSFKQLLTEGVFDFSFPGAKREDCKTLSRLVLLDLSKSKWVERYHLLKKCSSGESVQGFAAASSSFMNDKRVLDGQNKKLSETRTAMKSPKRVMTKTSVESKELVDSDGSCFSPRSLFALPSDGGSFTLESLHFDEDSSDQDLLLDVRSNSSFPQAELLHPPLSFGAQQASNSSSSVNLRLMHH 539
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 3827166 3834089 - CrPI670011_10g004780.1 Cre10g0478 509780

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre10g0478 539 ProSiteProfiles DEUBAD (DEUBiquitinase ADaptor) domain profile. 296 405 IPR044867 -
Cre10g0478 539 Gene3D - 289 372 IPR038108 -
Cre10g0478 539 Gene3D - 3 83 IPR013088 GO:0006355(InterPro)|GO:0008270(InterPro)
Cre10g0478 539 SMART GATA_3 1 55 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cre10g0478 539 Pfam Asx homology domain 283 368 IPR028020 -
Cre10g0478 539 Pfam GATA zinc finger 7 41 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cre10g0478 539 MobiDBLite consensus disorder prediction 110 124 - -
Cre10g0478 539 MobiDBLite consensus disorder prediction 520 539 - -
Cre10g0478 539 PANTHER OSJNBB0038F03.10 PROTEIN 1 371 IPR044589 -
Cre10g0478 539 ProSiteProfiles GATA-type zinc finger domain profile. 7 40 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cre10g0478 539 MobiDBLite consensus disorder prediction 103 124 - -
Cre10g0478 539 CDD ZnF_GATA 6 51 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cre10g0478 539 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 5 45 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre10g0478 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre10g0478 Cre-Chr10:3827166 Cre09g1243 Cre-Chr9:15740164 6.70E-202 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cre08g1153 . 83 349 C2C2-Gata Transcription Factor Family AT5G25830 55.7 9.3e-69 257.7
Cre11g1931 . 40 350 C2C2-Gata Transcription Factor Family AT5G25830 50.2 1.8e-67 253.4
Cre04g1619 . 108 284 C2C2-Gata Transcription Factor Family AT4G36240 50.3 9.1e-42 167.5
Cre10g0478 . 1 515 C2C2-Gata Transcription Factor Family AT4G17570 54.1 2.7e-139 492.7
Cre09g1243 . 1 517 C2C2-Gata Transcription Factor Family AT4G17570 52.1 1.0e-135 480.7
Cre10g0478 . 1 515 C2C2-Gata Transcription Factor Family AT5G47140 51.0 5.1e-121 431.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001256 2 2 1 2 3 2 5 2 2 2 2 2 4 2 1 4 2 3 4 2 2 2 2 2 2 2 2 7 3 1 74
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54479 PF13919 ASXH 2.60E-09 No_clan Cre TF