Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cre10g0484 | ATGGCCTCCAAGATTCTTCCTCAGGCCGTGATTTCTATTCCAAGAAACCCCAATCATTGTGCGCCGAGAAGGTTAGGGTTTTGTTCCGCAGTTTCTGTTACTCGTGTTTCGTTTTCTACTCTTTCCTCCAGCTCAATTGGCTGCCATTTTCACCACACCGTTGCGGCGCCGTTGAGACGAGCGTTTGTTGTGAGAGCTGAGGCGAATTCCGAAGCGGAGTCGGCGGTTGAAGAAGCTTCTGAAGCTGAAGTAGAAGCAGTAGTGGAGTCTGATGCTCAGCCTGAGGAGGAGAAGGCGCCGAGAAAGCCTCGTGTTAAGCTCGGAGATGTAATGGGGATACTTAATAAGCGGGCGATTGAAGCGTCGGAGAAGGAGAGGCCAATTCCAGACATTAGAACTGGTGACATTGTGGAGCTTAAACTGGAAGTTCAAGAAAATAGGCGTAGACTTTCTGTTTATAGAGGAATTGTCATATCGAAACAAAATGCTGGCATCCACACTACGATTAGAATTCGCCGAATTATTGCTGGTGTTGGTGTGGAAATTGTTTTTCCGTTATACTCACCAAATATCAGAGAGATAAAAGTGGTGAGCCACAGAAAGGTGAGGAGGGCAAGTTCATATTTTGACGACGCGGTGTCGATCAGCTACCGGAAGAACATCAATTGTGGAGGGGAGAGCCGTTCTGAATGTCGCGTTCTGATTTCATCACGACAACCAATTTCTCCTACTGTTCAACGTTTCTTCAATTCTGAAGTCCTCAGAATTTCAATTGAGTTCGCTCGCCACTTCCATGGTTTCTGTTCTGGTTGGTCAGAAGGTGGGTCTTGGCATCCTAACCTTGTGGAGGATGAAGGGAAGAATAAAGTGCTATTGCATCCTGGAAGTGGACAGCTTGGTTTTGGATGCCAGGGTGGTGAAGAAGGCAAGAATACTGAGGAAGGAGTTTTATCAGATGTCCCCGTTGGGACAAAGAGGAAGGACTTTTGGATATTATTTGGGATGAACTGTGTTAGTGTTTTTGAAGCTGGTGCCCCCGCTGCAATCGCATCTGGGTTATTGTTATTTTCGAGGGCTGGGCCCGTGGATGTACCCACTGAAGTTGGTGCCCCTGCTGCAATCACATCTAGGTTATTGTTATTTTCGGGGGCTGGGCCCGCCGATGTACCCACTGAAGCTAGTGCCACATTCGAGGGCCCCGCTCCCTCCACACTGGGAATCATCGAAGAGGCAACGACAGCTGAAGATAGTCTCCTAATATATTGCAAACCGGTTGAACTATACAACATTCTTCATCTTCGTTCCCTTAACAATCCTTCTTTTCTTCGACGTTGTTTGCATTACAAGTTACAAGCTAGGCGAAAAGAGAGGGTGAGCACTGGAGTTGTAATTTTCAACTATAGGGACTACAACAACATAGTTCGAAAAACTGAAGTGACTGAAGACTTCTCATGTCCATTTTGTTTGATGCTATGCGCAAGCTTTAAGGGTTTGCGCTACCACTTATGCTCTTCCCATGATATGTTCAACTTCGAATACTGGGTGACTGAAGAATATCAGGCGGTGAATGTCTCTGTGAAAATTGATGTCTTTAGATCTGAGACTGTAGCAGATGGAATGGACCCACAACTACAAACTTTCTTCTTCTGCACAAGACCGCGAAAGCGCAAGTTAAAGAACTCTATGCAGAATGGGAAGTATGTGCAGTTTTTGGAGATGGACTCACCTGGACCTGCCACAGAAGGCATGCACAAGGGATTTGTCGGGCATAACGCTGATGGTGTATCCTGTGAAAAAGAGGGGAGCCATTCATTCCCCATTGAGACTTATTTGCAGAATGCACAACAAGACGGAGAAAATATTGGCCCTGAATGTCCTTCCTCTATGGAGTGCATTGAACGTGTTGCATCCAGCTCAAATATTCCAGGTGTCTCAATGGCTATCAATCAATCTTCTACAGGTCCTGAATGTTATAAAGTACTGTCTGGAAGTGATCATTTACAACCAGCCAAAGCAAGGAAGTTAACAGTAGAACGAGACCCTAGAAACCGCATGCTCTTGCAGAAACGGCAGTTTTATCACTCTCACAGGGTTCAGCCTATGGCTCTAGATAAAGTACTATCCGACAAAGATAGTGAGGACGAAGTAGATGATGACATTGCAGATTTCGAAGACCGAAGGATGCTCGATGATTTCGTGGATGTCACCAGAGATGAAAAGCGGCTTATGCATCTATGGAACTCCTTTGTTAGAAAGCAAAGGGTGCTAGCTGATGGTCACGTGCCGTGGGCATGTGAAGCATTCTCAAAACTTCACGGGAAAGAGCTTATCTCATCTCCGCCTCTCTTTTGGTGTTGGAGACTATTCATGATCAAGCTCTGGAATCATGGTCTTCTTGATGCCTCTACCATGAACAACTGTAATTTAACTCTTGAAGGATTCAAAGATGAGAGTTTGAATGCGACGAAAAACTGTAGAGGAGATGACGATTAG | 2493 | 45.61 | MASKILPQAVISIPRNPNHCAPRRLGFCSAVSVTRVSFSTLSSSSIGCHFHHTVAAPLRRAFVVRAEANSEAESAVEEASEAEVEAVVESDAQPEEEKAPRKPRVKLGDVMGILNKRAIEASEKERPIPDIRTGDIVELKLEVQENRRRLSVYRGIVISKQNAGIHTTIRIRRIIAGVGVEIVFPLYSPNIREIKVVSHRKVRRASSYFDDAVSISYRKNINCGGESRSECRVLISSRQPISPTVQRFFNSEVLRISIEFARHFHGFCSGWSEGGSWHPNLVEDEGKNKVLLHPGSGQLGFGCQGGEEGKNTEEGVLSDVPVGTKRKDFWILFGMNCVSVFEAGAPAAIASGLLLFSRAGPVDVPTEVGAPAAITSRLLLFSGAGPADVPTEASATFEGPAPSTLGIIEEATTAEDSLLIYCKPVELYNILHLRSLNNPSFLRRCLHYKLQARRKERVSTGVVIFNYRDYNNIVRKTEVTEDFSCPFCLMLCASFKGLRYHLCSSHDMFNFEYWVTEEYQAVNVSVKIDVFRSETVADGMDPQLQTFFFCTRPRKRKLKNSMQNGKYVQFLEMDSPGPATEGMHKGFVGHNADGVSCEKEGSHSFPIETYLQNAQQDGENIGPECPSSMECIERVASSSNIPGVSMAINQSSTGPECYKVLSGSDHLQPAKARKLTVERDPRNRMLLQKRQFYHSHRVQPMALDKVLSDKDSEDEVDDDIADFEDRRMLDDFVDVTRDEKRLMHLWNSFVRKQRVLADGHVPWACEAFSKLHGKELISSPPLFWCWRLFMIKLWNHGLLDASTMNNCNLTLEGFKDESLNATKNCRGDDD | 830 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 3916622 | 3940704 | + | CrPI670011_10g004840.1 | Cre10g0484 | 509786 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cre10g0484 | 830 | Pfam | Ribosomal protein L19 | 118 | 209 | IPR001857 | GO:0003735(InterPro)|GO:0005840(InterPro)|GO:0006412(InterPro) | |
Cre10g0484 | 830 | PANTHER | POLYCOMB GROUP PROTEIN | 409 | 457 | - | GO:0005634(PANTHER)|GO:0031490(PANTHER) | |
Cre10g0484 | 830 | PRINTS | Ribosomal protein L19 signature | 115 | 144 | IPR001857 | GO:0003735(InterPro)|GO:0005840(InterPro)|GO:0006412(InterPro) | |
Cre10g0484 | 830 | PRINTS | Ribosomal protein L19 signature | 174 | 197 | IPR001857 | GO:0003735(InterPro)|GO:0005840(InterPro)|GO:0006412(InterPro) | |
Cre10g0484 | 830 | CDD | ZnB-Zn_EMF2-like | 409 | 531 | - | - | |
Cre10g0484 | 830 | Gene3D | - | 90 | 212 | IPR038657 | - | |
Cre10g0484 | 830 | SUPERFAMILY | Translation proteins SH3-like domain | 110 | 209 | IPR008991 | - | |
Cre10g0484 | 830 | Coils | Coil | 65 | 85 | - | - | |
Cre10g0484 | 830 | FunFam | 50S ribosomal protein L19, chloroplastic | 108 | 213 | - | - | |
Cre10g0484 | 830 | Pfam | VEFS-Box of polycomb protein | 679 | 808 | IPR019135 | - | |
Cre10g0484 | 830 | CDD | VEFS-box_EMF2-like | 687 | 813 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cre01g1225 | Cre-Chr1:25154199 | Cre10g0484 | Cre-Chr10:3916622 | 2.70E-25 | dispersed | |
Cre01g1226 | Cre-Chr1:25179248 | Cre10g0484 | Cre-Chr10:3916622 | 5.00E-29 | dispersed | |
Cre07g2042 | Cre-Chr7:36038006 | Cre10g0484 | Cre-Chr10:3916622 | 6.20E-10 | dispersed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cre10g0484 | - | - | - | 0.0 |