Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre10g0484 ATGGCCTCCAAGATTCTTCCTCAGGCCGTGATTTCTATTCCAAGAAACCCCAATCATTGTGCGCCGAGAAGGTTAGGGTTTTGTTCCGCAGTTTCTGTTACTCGTGTTTCGTTTTCTACTCTTTCCTCCAGCTCAATTGGCTGCCATTTTCACCACACCGTTGCGGCGCCGTTGAGACGAGCGTTTGTTGTGAGAGCTGAGGCGAATTCCGAAGCGGAGTCGGCGGTTGAAGAAGCTTCTGAAGCTGAAGTAGAAGCAGTAGTGGAGTCTGATGCTCAGCCTGAGGAGGAGAAGGCGCCGAGAAAGCCTCGTGTTAAGCTCGGAGATGTAATGGGGATACTTAATAAGCGGGCGATTGAAGCGTCGGAGAAGGAGAGGCCAATTCCAGACATTAGAACTGGTGACATTGTGGAGCTTAAACTGGAAGTTCAAGAAAATAGGCGTAGACTTTCTGTTTATAGAGGAATTGTCATATCGAAACAAAATGCTGGCATCCACACTACGATTAGAATTCGCCGAATTATTGCTGGTGTTGGTGTGGAAATTGTTTTTCCGTTATACTCACCAAATATCAGAGAGATAAAAGTGGTGAGCCACAGAAAGGTGAGGAGGGCAAGTTCATATTTTGACGACGCGGTGTCGATCAGCTACCGGAAGAACATCAATTGTGGAGGGGAGAGCCGTTCTGAATGTCGCGTTCTGATTTCATCACGACAACCAATTTCTCCTACTGTTCAACGTTTCTTCAATTCTGAAGTCCTCAGAATTTCAATTGAGTTCGCTCGCCACTTCCATGGTTTCTGTTCTGGTTGGTCAGAAGGTGGGTCTTGGCATCCTAACCTTGTGGAGGATGAAGGGAAGAATAAAGTGCTATTGCATCCTGGAAGTGGACAGCTTGGTTTTGGATGCCAGGGTGGTGAAGAAGGCAAGAATACTGAGGAAGGAGTTTTATCAGATGTCCCCGTTGGGACAAAGAGGAAGGACTTTTGGATATTATTTGGGATGAACTGTGTTAGTGTTTTTGAAGCTGGTGCCCCCGCTGCAATCGCATCTGGGTTATTGTTATTTTCGAGGGCTGGGCCCGTGGATGTACCCACTGAAGTTGGTGCCCCTGCTGCAATCACATCTAGGTTATTGTTATTTTCGGGGGCTGGGCCCGCCGATGTACCCACTGAAGCTAGTGCCACATTCGAGGGCCCCGCTCCCTCCACACTGGGAATCATCGAAGAGGCAACGACAGCTGAAGATAGTCTCCTAATATATTGCAAACCGGTTGAACTATACAACATTCTTCATCTTCGTTCCCTTAACAATCCTTCTTTTCTTCGACGTTGTTTGCATTACAAGTTACAAGCTAGGCGAAAAGAGAGGGTGAGCACTGGAGTTGTAATTTTCAACTATAGGGACTACAACAACATAGTTCGAAAAACTGAAGTGACTGAAGACTTCTCATGTCCATTTTGTTTGATGCTATGCGCAAGCTTTAAGGGTTTGCGCTACCACTTATGCTCTTCCCATGATATGTTCAACTTCGAATACTGGGTGACTGAAGAATATCAGGCGGTGAATGTCTCTGTGAAAATTGATGTCTTTAGATCTGAGACTGTAGCAGATGGAATGGACCCACAACTACAAACTTTCTTCTTCTGCACAAGACCGCGAAAGCGCAAGTTAAAGAACTCTATGCAGAATGGGAAGTATGTGCAGTTTTTGGAGATGGACTCACCTGGACCTGCCACAGAAGGCATGCACAAGGGATTTGTCGGGCATAACGCTGATGGTGTATCCTGTGAAAAAGAGGGGAGCCATTCATTCCCCATTGAGACTTATTTGCAGAATGCACAACAAGACGGAGAAAATATTGGCCCTGAATGTCCTTCCTCTATGGAGTGCATTGAACGTGTTGCATCCAGCTCAAATATTCCAGGTGTCTCAATGGCTATCAATCAATCTTCTACAGGTCCTGAATGTTATAAAGTACTGTCTGGAAGTGATCATTTACAACCAGCCAAAGCAAGGAAGTTAACAGTAGAACGAGACCCTAGAAACCGCATGCTCTTGCAGAAACGGCAGTTTTATCACTCTCACAGGGTTCAGCCTATGGCTCTAGATAAAGTACTATCCGACAAAGATAGTGAGGACGAAGTAGATGATGACATTGCAGATTTCGAAGACCGAAGGATGCTCGATGATTTCGTGGATGTCACCAGAGATGAAAAGCGGCTTATGCATCTATGGAACTCCTTTGTTAGAAAGCAAAGGGTGCTAGCTGATGGTCACGTGCCGTGGGCATGTGAAGCATTCTCAAAACTTCACGGGAAAGAGCTTATCTCATCTCCGCCTCTCTTTTGGTGTTGGAGACTATTCATGATCAAGCTCTGGAATCATGGTCTTCTTGATGCCTCTACCATGAACAACTGTAATTTAACTCTTGAAGGATTCAAAGATGAGAGTTTGAATGCGACGAAAAACTGTAGAGGAGATGACGATTAG 2493 45.61 MASKILPQAVISIPRNPNHCAPRRLGFCSAVSVTRVSFSTLSSSSIGCHFHHTVAAPLRRAFVVRAEANSEAESAVEEASEAEVEAVVESDAQPEEEKAPRKPRVKLGDVMGILNKRAIEASEKERPIPDIRTGDIVELKLEVQENRRRLSVYRGIVISKQNAGIHTTIRIRRIIAGVGVEIVFPLYSPNIREIKVVSHRKVRRASSYFDDAVSISYRKNINCGGESRSECRVLISSRQPISPTVQRFFNSEVLRISIEFARHFHGFCSGWSEGGSWHPNLVEDEGKNKVLLHPGSGQLGFGCQGGEEGKNTEEGVLSDVPVGTKRKDFWILFGMNCVSVFEAGAPAAIASGLLLFSRAGPVDVPTEVGAPAAITSRLLLFSGAGPADVPTEASATFEGPAPSTLGIIEEATTAEDSLLIYCKPVELYNILHLRSLNNPSFLRRCLHYKLQARRKERVSTGVVIFNYRDYNNIVRKTEVTEDFSCPFCLMLCASFKGLRYHLCSSHDMFNFEYWVTEEYQAVNVSVKIDVFRSETVADGMDPQLQTFFFCTRPRKRKLKNSMQNGKYVQFLEMDSPGPATEGMHKGFVGHNADGVSCEKEGSHSFPIETYLQNAQQDGENIGPECPSSMECIERVASSSNIPGVSMAINQSSTGPECYKVLSGSDHLQPAKARKLTVERDPRNRMLLQKRQFYHSHRVQPMALDKVLSDKDSEDEVDDDIADFEDRRMLDDFVDVTRDEKRLMHLWNSFVRKQRVLADGHVPWACEAFSKLHGKELISSPPLFWCWRLFMIKLWNHGLLDASTMNNCNLTLEGFKDESLNATKNCRGDDD 830
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 3916622 3940704 + CrPI670011_10g004840.1 Cre10g0484 509786
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre10g0484 830 Pfam Ribosomal protein L19 118 209 IPR001857 GO:0003735(InterPro)|GO:0005840(InterPro)|GO:0006412(InterPro)
Cre10g0484 830 PANTHER POLYCOMB GROUP PROTEIN 409 457 - GO:0005634(PANTHER)|GO:0031490(PANTHER)
Cre10g0484 830 PRINTS Ribosomal protein L19 signature 115 144 IPR001857 GO:0003735(InterPro)|GO:0005840(InterPro)|GO:0006412(InterPro)
Cre10g0484 830 PRINTS Ribosomal protein L19 signature 174 197 IPR001857 GO:0003735(InterPro)|GO:0005840(InterPro)|GO:0006412(InterPro)
Cre10g0484 830 CDD ZnB-Zn_EMF2-like 409 531 - -
Cre10g0484 830 Gene3D - 90 212 IPR038657 -
Cre10g0484 830 SUPERFAMILY Translation proteins SH3-like domain 110 209 IPR008991 -
Cre10g0484 830 Coils Coil 65 85 - -
Cre10g0484 830 FunFam 50S ribosomal protein L19, chloroplastic 108 213 - -
Cre10g0484 830 Pfam VEFS-Box of polycomb protein 679 808 IPR019135 -
Cre10g0484 830 CDD VEFS-box_EMF2-like 687 813 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre01g1225 Cre-Chr1:25154199 Cre10g0484 Cre-Chr10:3916622 2.70E-25 dispersed
Cre01g1226 Cre-Chr1:25179248 Cre10g0484 Cre-Chr10:3916622 5.00E-29 dispersed
Cre07g2042 Cre-Chr7:36038006 Cre10g0484 Cre-Chr10:3916622 6.20E-10 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre10g0484 - - - 0.0