Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre10g0488 ATGATGTACGAACAGAGTAATGGCTGTGAATCCGATTTTGTTCTTTTGGAAACCATACGGCGCCATTTGTTGGGAGAATCCGACGCTTACCGATGTGGGAATTTTGCCCTTGCCGGAACCGCCTCGCCGGTTTTCTGCCGGAGCTCCAGTTTCGGCAGCTTGTACCCTTGTTTGACTGAAAATTGGGGCGATTTGCCTCTAAAAGAGGATGATTCCGAGGACATGGTCATCGCCGGCGTCCTCCGTGATGCCGTCAGTGTTGGTTGGGTTCCGTCGCTCGGCGCTTCGCCGTCGGATGCCTTCAATTTTGGATTCTCCGATGTCAAGCCGGAGCCGGAGATTCTCCCGCCGGTGAACATATTGCCGGAAGTTAAGGTGGCGGTGGCGGAGGCGGTGGAGGCGGCGGCGGCGACGCCGTTGCCGGCGGTGGTTCCGGCGAAGGGGAAGCATTACCGGGGTGTCCGGCAGCGGCCGTGGGGGAAGTTTGCGGCGGAGATTCGAGACCCAGCAAAAAACGGAGCTCGGGTTTGGCTTGGAACGTTTGAGACGGCGGAGGATGCGGCACTTGCTTATGACCGCGCCGCTTATCGAATGCGTGGCTCGAAAGCTCTTCTCAATTTCCCACTTCGAGTTAATTCGGGCGAACCCGACCCGGTTAGAGTGACATCGAAACGGTCATCGCCTCGATCGTCGCCAGAGCCTACTTCATCGTTGTCGTCGGTAGAGAGTGGGTCCCCTAAGCGGAGGAAGAAGGCGGACGGCACGGCAGTGACACCCGCTCTAGCTTCGCCGGAGTTGATTCAATTGGTGGTGGGGACCAGTGAATTGCAAGTGGAAGCTGGCGTGGCAAAGTGTACAAGTGGCGAGAAATGA 873 57.62 MMYEQSNGCESDFVLLETIRRHLLGESDAYRCGNFALAGTASPVFCRSSSFGSLYPCLTENWGDLPLKEDDSEDMVIAGVLRDAVSVGWVPSLGASPSDAFNFGFSDVKPEPEILPPVNILPEVKVAVAEAVEAAAATPLPAVVPAKGKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAYRMRGSKALLNFPLRVNSGEPDPVRVTSKRSSPRSSPEPTSSLSSVESGSPKRRKKADGTAVTPALASPELIQLVVGTSELQVEAGVAKCTSGEK 290
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 3977494 3978366 - CrPI670011_10g004880.1 Cre10g0488 509790
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre10g0488 290 MobiDBLite consensus disorder prediction 219 243 - -
Cre10g0488 290 SMART rav1_2 150 214 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre10g0488 290 Pfam AP2 domain 150 201 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre10g0488 290 CDD AP2 149 208 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre10g0488 290 PANTHER DNA-BINDING DOMAIN 133 237 IPR044808 GO:0003700(InterPro)|GO:0009873(InterPro)
Cre10g0488 290 ProSiteProfiles AP2/ERF domain profile. 150 208 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre10g0488 290 PRINTS Ethylene responsive element binding protein signature 174 190 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre10g0488 290 PRINTS Ethylene responsive element binding protein signature 151 162 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre10g0488 290 Gene3D AP2/ERF domain 149 211 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre10g0488 290 MobiDBLite consensus disorder prediction 214 258 - -
Cre10g0488 290 FunFam Ethylene-responsive transcription factor 2 149 209 - -
Cre10g0488 290 SUPERFAMILY DNA-binding domain 150 210 IPR016177 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre05g0070 Cre-Chr5:904083 Cre10g0488 Cre-Chr10:3977494 5.00E-25 dispersed
Cre07g2037 Cre-Chr7:36009905 Cre10g0488 Cre-Chr10:3977494 3.40E-36 dispersed
Cre09g0733 Cre-Chr9:7147622 Cre10g0488 Cre-Chr10:3977494 2.60E-23 dispersed
Cre10g0488 Cre-Chr10:3977494 Cre10g0724 Cre-Chr10:7001235 5.90E-19 dispersed
Cre10g0488 Cre-Chr10:3977494 Cre10g0489 Cre-Chr10:4010989 1.90E-25 tandem
Cre10g0488 Cre-Chr10:3977494 Cre09g2079 Cre-Chr9:39857391 4.60E-80 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54480 PF00847 AP2 1.20E-14 CL0081 Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre10g0488 K09286 - csv:101203663 434.106