Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre10g0495 ATGATGGCTGGGAAAGATGATAATCTTGGATTAAGCCTTGGATTGAGCTTTGATTCTCATCATTTACAGCTCAATCTCATGCCTTCTTCTTGGAATAACGATGCTTCTTCAGATCGGACATCGGAAACAGGGCGATCGCTACTCCGAGGCATCGATGTGAACCGGATGCCGCCGTCGTCAACGGCGGATTGTGAAGAGGAGGCGGCGATGTCGAGTCCTAACAGTACGGTTTCGAGTGTGAGTGGGAAACGGAGTGAACGAGAGATGAACGGCGAAGATCTGGACGGAGATAGAGCTTGTTCTAGAGGAATTAGTGATGAAGAAGACGGAGAAACTTCTAGAAAAAAGCTTCGGCTTACTAAAGATCAGTCCGCCGTCTTGGAAGAAAGCTTCAAAGAACACAACACTCTCAATCCTAAGCAAAAGTTGGCGTTGGCGAAACAGTTAGGTCTAACGCCAAGACAAGTCGAAGTCTGGTTCCAAAACAGAAGGGCAAGGACAAAATTGAAGCAAACGGAAGTAGATTGCGAGTTTCTAAAGAGATGTTGTGAGAATCTAACGGAGGAGAATAGGCGGTTGCAAAAGGAAGTACAAGAACTGAGAGCACTCAAACTTTCCCCACAGTTCTACATGCACATGACCCCACCCACCACCCTCACCATGTGCCCCTCATGTGAGCGAGTCGCCGTCCCACCCTCCACGTCAGCCCAACCTACGCATGTGACACGAATAGGCCAGGCCCAACCTCAGGCCCACCACACTCGGCCCATCCACATCAACCCCTGGGCCTCCGCCATCCCCGCCCGGCCCTTCAACGCCCTACACCCTCGCTCGTAA 837 51.02 MMAGKDDNLGLSLGLSFDSHHLQLNLMPSSWNNDASSDRTSETGRSLLRGIDVNRMPPSSTADCEEEAAMSSPNSTVSSVSGKRSEREMNGEDLDGDRACSRGISDEEDGETSRKKLRLTKDQSAVLEESFKEHNTLNPKQKLALAKQLGLTPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTEENRRLQKEVQELRALKLSPQFYMHMTPPTTLTMCPSCERVAVPPSTSAQPTHVTRIGQAQPQAHHTRPIHINPWASAIPARPFNALHPRS 278
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 4074247 4075825 - CrPI670011_10g004950.1 Cre10g0495 509797
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre10g0495 278 FunFam Homeobox-leucine zipper protein 18 101 175 - -
Cre10g0495 278 PRINTS Lambda-repressor HTH signature 141 150 IPR000047 GO:0003677(InterPro)
Cre10g0495 278 PRINTS Lambda-repressor HTH signature 150 166 IPR000047 GO:0003677(InterPro)
Cre10g0495 278 ProSiteProfiles 'Homeobox' domain profile. 110 170 IPR001356 GO:0003677(InterPro)
Cre10g0495 278 Coils Coil 169 206 - -
Cre10g0495 278 CDD homeodomain 114 171 IPR001356 GO:0003677(InterPro)
Cre10g0495 278 MobiDBLite consensus disorder prediction 30 44 - -
Cre10g0495 278 Pfam Homeodomain 114 168 IPR001356 GO:0003677(InterPro)
Cre10g0495 278 MobiDBLite consensus disorder prediction 85 116 - -
Cre10g0495 278 Pfam Homeobox associated leucine zipper 170 204 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Cre10g0495 278 SUPERFAMILY Homeodomain-like 103 171 IPR009057 -
Cre10g0495 278 MobiDBLite consensus disorder prediction 30 116 - -
Cre10g0495 278 MobiDBLite consensus disorder prediction 65 84 - -
Cre10g0495 278 Pfam HD-ZIP protein N terminus 2 88 IPR006712 GO:0005634(InterPro)
Cre10g0495 278 SMART HOX_1 112 174 IPR001356 GO:0003677(InterPro)
Cre10g0495 278 Gene3D - 118 168 - -
Cre10g0495 278 ProSitePatterns 'Homeobox' domain signature. 145 168 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Cre10g0495 278 SMART halz 170 213 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Cre10g0495 278 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 2 247 IPR050762 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre05g0107 Cre-Chr5:1285485 Cre10g0495 Cre-Chr10:4074247 2.50E-73 dispersed
Cre09g1114 Cre-Chr9:11791150 Cre10g0495 Cre-Chr10:4074247 5.90E-08 dispersed
Cre09g1922 Cre-Chr9:37998431 Cre10g0495 Cre-Chr10:4074247 4.10E-34 dispersed
Cre10g0495 Cre-Chr10:4074247 Cre10g1878 Cre-Chr10:33370003 1.10E-49 dispersed
Cre10g0495 Cre-Chr10:4074247 Cre09g0360 Cre-Chr9:3557224 1.50E-51 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54482 PF04618 HD-ZIP_N 1.00E-20 No_clan Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre10g0495 K09338 - csv:101223208 462.611