Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre10g0498 ATGGAAGATCCTCTTCACAGATTCCAATTTCATTCTCAATCTTCATCTTCTTCTTCATCAGATATCAAAAATTGCATCAAAGAAAAAAACTCCAAGAAAGTTAAACTCGAAAACGACGGCAAACATCCTACCTATCGCGGCGTTCGAATGCGACAATGGGGAAAATGGGTTTCCGAAATCAGAGAACCAAAGAAGAAATCCAGAATTTGGTTAGGCACATTTTCCACGCCGGAAATGGCCGCCAGAGCTCACGACGTCGCCGCCAGAACTATCAAAGGTCATTCCGCTTACCTTAATTTCCCTGAATTAGCTCATCGTCTCCCTCGTCCTGCTAGTTCTTCTCCTAAAGACATTCGAGCCGCCGCCGCTAAAGCCGCTTCGTTTTCCACTAATAATCTTCTCGATTCCACTCACGATGATGATCTCAACTCCGCCGCCAAATCTGACCTCAATCTCAATCGCTCCCCTTCCTCCGCCGTTGCTGCCAAATCCTCCGGTGAAATTGACGATCCTTTCTTCGATCTCCCCGATCTGTTCCTTGATGATCCCAATCATCAAATTGATACATTCTGTTTCTCCCAATTTCTCCCTATTGACGGTTTCGACTCTGTTTTTACACTGCCGCCGTCACCGCCGTCGCCGCCGTCTGATTGTTTCGCTTACAGAGGTAGCCTACTCTAG 681 46.84 MEDPLHRFQFHSQSSSSSSSDIKNCIKEKNSKKVKLENDGKHPTYRGVRMRQWGKWVSEIREPKKKSRIWLGTFSTPEMAARAHDVAARTIKGHSAYLNFPELAHRLPRPASSSPKDIRAAAAKAASFSTNNLLDSTHDDDLNSAAKSDLNLNRSPSSAVAAKSSGEIDDPFFDLPDLFLDDPNHQIDTFCFSQFLPIDGFDSVFTLPPSPPSPPSDCFAYRGSLL 226
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 4143869 4144549 + CrPI670011_10g004980.1 Cre10g0498 509800
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre10g0498 226 CDD AP2 45 103 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre10g0498 226 ProSiteProfiles AP2/ERF domain profile. 44 101 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre10g0498 226 SUPERFAMILY DNA-binding domain 44 102 IPR016177 GO:0003677(InterPro)
Cre10g0498 226 MobiDBLite consensus disorder prediction 1 43 - -
Cre10g0498 226 SMART rav1_2 44 107 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre10g0498 226 MobiDBLite consensus disorder prediction 25 43 - -
Cre10g0498 226 PRINTS Ethylene responsive element binding protein signature 45 56 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre10g0498 226 PRINTS Ethylene responsive element binding protein signature 67 83 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre10g0498 226 MobiDBLite consensus disorder prediction 8 24 - -
Cre10g0498 226 FunFam Ethylene-responsive transcription factor 2 43 102 - -
Cre10g0498 226 Gene3D AP2/ERF domain 44 102 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre10g0498 226 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 27 184 IPR051032 -
Cre10g0498 226 Pfam AP2 domain 44 94 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre06g1012 Cre-Chr6:3752157 Cre10g0498 Cre-Chr10:4143869 5.70E-34 dispersed
Cre08g0095 Cre-Chr8:1990090 Cre10g0498 Cre-Chr10:4143869 6.40E-27 dispersed
Cre10g0498 Cre-Chr10:4143869 Cre11g0713 Cre-Chr11:4246311 1.40E-36 dispersed
Cre10g0498 Cre-Chr10:4143869 Cre06g1719 Cre-Chr6:14667212 8.40E-37 transposed
Cre10g0498 Cre-Chr10:4143869 Cre11g1934 Cre-Chr11:31117500 8.40E-37 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54484 PF00847 AP2 5.10E-13 CL0081 Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre10g0498 - - - 0.0