Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cre10g0498 | ATGGAAGATCCTCTTCACAGATTCCAATTTCATTCTCAATCTTCATCTTCTTCTTCATCAGATATCAAAAATTGCATCAAAGAAAAAAACTCCAAGAAAGTTAAACTCGAAAACGACGGCAAACATCCTACCTATCGCGGCGTTCGAATGCGACAATGGGGAAAATGGGTTTCCGAAATCAGAGAACCAAAGAAGAAATCCAGAATTTGGTTAGGCACATTTTCCACGCCGGAAATGGCCGCCAGAGCTCACGACGTCGCCGCCAGAACTATCAAAGGTCATTCCGCTTACCTTAATTTCCCTGAATTAGCTCATCGTCTCCCTCGTCCTGCTAGTTCTTCTCCTAAAGACATTCGAGCCGCCGCCGCTAAAGCCGCTTCGTTTTCCACTAATAATCTTCTCGATTCCACTCACGATGATGATCTCAACTCCGCCGCCAAATCTGACCTCAATCTCAATCGCTCCCCTTCCTCCGCCGTTGCTGCCAAATCCTCCGGTGAAATTGACGATCCTTTCTTCGATCTCCCCGATCTGTTCCTTGATGATCCCAATCATCAAATTGATACATTCTGTTTCTCCCAATTTCTCCCTATTGACGGTTTCGACTCTGTTTTTACACTGCCGCCGTCACCGCCGTCGCCGCCGTCTGATTGTTTCGCTTACAGAGGTAGCCTACTCTAG | 681 | 46.84 | MEDPLHRFQFHSQSSSSSSSDIKNCIKEKNSKKVKLENDGKHPTYRGVRMRQWGKWVSEIREPKKKSRIWLGTFSTPEMAARAHDVAARTIKGHSAYLNFPELAHRLPRPASSSPKDIRAAAAKAASFSTNNLLDSTHDDDLNSAAKSDLNLNRSPSSAVAAKSSGEIDDPFFDLPDLFLDDPNHQIDTFCFSQFLPIDGFDSVFTLPPSPPSPPSDCFAYRGSLL | 226 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 4143869 | 4144549 | + | CrPI670011_10g004980.1 | Cre10g0498 | 509800 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cre10g0498 | 226 | CDD | AP2 | 45 | 103 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre10g0498 | 226 | ProSiteProfiles | AP2/ERF domain profile. | 44 | 101 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre10g0498 | 226 | SUPERFAMILY | DNA-binding domain | 44 | 102 | IPR016177 | GO:0003677(InterPro) | |
Cre10g0498 | 226 | MobiDBLite | consensus disorder prediction | 1 | 43 | - | - | |
Cre10g0498 | 226 | SMART | rav1_2 | 44 | 107 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre10g0498 | 226 | MobiDBLite | consensus disorder prediction | 25 | 43 | - | - | |
Cre10g0498 | 226 | PRINTS | Ethylene responsive element binding protein signature | 45 | 56 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre10g0498 | 226 | PRINTS | Ethylene responsive element binding protein signature | 67 | 83 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre10g0498 | 226 | MobiDBLite | consensus disorder prediction | 8 | 24 | - | - | |
Cre10g0498 | 226 | FunFam | Ethylene-responsive transcription factor 2 | 43 | 102 | - | - | |
Cre10g0498 | 226 | Gene3D | AP2/ERF domain | 44 | 102 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre10g0498 | 226 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED | 27 | 184 | IPR051032 | - | |
Cre10g0498 | 226 | Pfam | AP2 domain | 44 | 94 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cre06g1012 | Cre-Chr6:3752157 | Cre10g0498 | Cre-Chr10:4143869 | 5.70E-34 | dispersed | |
Cre08g0095 | Cre-Chr8:1990090 | Cre10g0498 | Cre-Chr10:4143869 | 6.40E-27 | dispersed | |
Cre10g0498 | Cre-Chr10:4143869 | Cre11g0713 | Cre-Chr11:4246311 | 1.40E-36 | dispersed | |
Cre10g0498 | Cre-Chr10:4143869 | Cre06g1719 | Cre-Chr6:14667212 | 8.40E-37 | transposed | |
Cre10g0498 | Cre-Chr10:4143869 | Cre11g1934 | Cre-Chr11:31117500 | 8.40E-37 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
54484 | PF00847 | AP2 | 5.10E-13 | CL0081 | Cre | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cre10g0498 | - | - | - | 0.0 |