Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre10g0542 ATGTCATCTTCTTCGATTCCTAACACTTTCTCTCAAGTTCCTCCTCCTCTTCTTCCTCCTCCTCCTTCCTCTTCCGAGCAGCTTTGCTATGTCCATTGTAACATTTGCGACACCGTTTTAGTGGTGAGTGTTCCTTGTAGTAGTTTGTTCAAAAGGGTCACCGTTCGTTGTGGCTATTGCGCCAATCTTCTGCCGGTGAACATGTGTGGTGGCATGCTTCTCCCTTCTTCAAATCAGTTTCATGGCTTTGCTCACTCAACCCCTAATTTTCTCTCTCCCAATACTCACAATTTCTTGGAAGAGATCTCAAATTCAAATCCAAATCCGAATCCAAATTTTCTGATGAACCAAGCAGAAGGAATTGATTTAACCATGGCCACTCGTGTAGCTAATGATCTTCCAAGGCAGCCTCCAAGCATAAATAGACCTCCAGAAAAGAGACAAAGGGTGCCCTCTGCTTACAACCGATTCATCAAGGAGGAGATCCAACGGATTAAGACTGCCAATCCAGACATATCTCATAGAGAAGCCTTCAGTGCTGCTGCTAAGAATTGGGCTCACTTCCCTCACATTCATTTTGGTTCTTCTTCCTGA 594 44.44 MSSSSIPNTFSQVPPPLLPPPPSSSEQLCYVHCNICDTVLVVSVPCSSLFKRVTVRCGYCANLLPVNMCGGMLLPSSNQFHGFAHSTPNFLSPNTHNFLEEISNSNPNPNPNFLMNQAEGIDLTMATRVANDLPRQPPSINRPPEKRQRVPSAYNRFIKEEIQRIKTANPDISHREAFSAAAKNWAHFPHIHFGSSS 197
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 4934869 4939076 - CrPI670011_10g005420.1 Cre10g0542 509844
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre10g0542 197 MobiDBLite consensus disorder prediction 132 151 - -
Cre10g0542 197 Pfam YABBY protein 24 194 IPR006780 GO:0007275(InterPro)
Cre10g0542 197 CDD HMG-box_SF 149 185 - -
Cre10g0542 197 Gene3D High mobility group box domain 136 190 IPR036910 -
Cre10g0542 197 FunFam axial regulator YABBY 5-like 133 191 - -
Cre10g0542 197 SUPERFAMILY HMG-box 135 188 IPR036910 -
Cre10g0542 197 PANTHER PROTEIN YABBY 6-RELATED 24 196 IPR006780 GO:0005634(PANTHER)|GO:0007275(InterPro)|GO:0009944(PANTHER)|GO:0010154(PANTHER)|GO:0010158(PANTHER)|GO:0045165(PANTHER)|GO:1902183(PANTHER)|GO:2000024(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre10g0542 Cre-Chr10:4934869 Cre11g0793 Cre-Chr11:5151634 6.60E-38 dispersed
Cre10g0542 Cre-Chr10:4934869 Cre09g2142 Cre-Chr9:40436043 4.70E-60 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54487 PF04690 YABBY 1.60E-68 CL0114 Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre10g0542 K25796 - csv:101219601 332.798