Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre10g0552 ATGCACTGCATTCTTACGCGCCGCCCTACAAAGCCCCGCCACCGCTCACCTCCAGAGACTCCCGCCGTCAAGCGCCTACCGGCCGATTCTTCTGCTACTCCCTCTTGTATTCTGGAGAAAGAGATTCTCGCCATGATAACGTTGGTTAGATTTCGGAATTTATCGTACAAATTCCGAAACGAAACTGATTTAATTAGATGTTTTCATTCCGGAACGAATCTGAAATCCAATTCTCCGGATTCTTCCTCCTCTACCGTTGCTATTTTCTGGGATTTGGATAATAAACCACCGAAATCGTTACCGCCTTACGAAGCTGCTGTTAAGCTCAAGGCTGCAGCAGCTTCCTTCGGCGCGGTTCGGTACATGGTGGCGTATGCGAATCGGCATGCGTTTAGTTATGTGCCGCAAGTTGTTAGAGAGCAGAGAAGAGAGAGGAAGATGCTTAATCAATTGGAGAGTAAGGGTGTGATTAAATCGATTGAGCCATATCTGTGTCGTGTTTGTGGGAGGAATTTTTATACGAATGAGAAGTTAGTGAATCATTTTACGCAAATTCATGAGAGTGAGCATAAGAAGAGGTTGAATCAGATTGAATCTGCGAAGGGTAGTAGAAGAGTGAAGTTGCTAGCTAAGTATTCGATGAAAATACAGAAGTATAAGAATGCTGCTAGGGATGTTTTGACTCCCAAAGTGGGATATGGTTTAGCAGATGAGTTGAAGAGGGCAGGGTTTTTTGTGAAGACTGTGTCGGATAAGCCTGAAGCTGCTGATGTAGAATTGAGAAACGACATGGTTGAGATTATGGATAGGAAAAGGGCAGAGTGTTTGGTTCTTGTATCAGATGATTCTGATTTTGTGGATGTTTTGAAGGAGGCCAGGTTGAGATGTCTCAGGACAGTTGTTGTAGGGGATTTCAATGATGGGCCATTGAAGAGAAATGCTGATACTGGGTTTTCTTGGAAGGAGATTTTAATGGGGAAGGCTAAAAAGGAGGCTGTGTCTGTTGTTGGAAAATGGAAGGATCGGGATGTTTTGAAGAGATTGGAATGGACATACAATCCTCAGTTGGAGAAGAAAGTGTTTGGTTTAGATGATATAGGCGAGGATGAAGATGTTGAAGAAGGTTCTGTTGATGGGGGACTTTGTAAGAATATGCAAAATGATGACAGGGGTGCTTGGTGGGATCTCAGCTCTGATGCTGATACTGAAACTGTTTCCCCACCATCATGGAAATGA 1236 43.85 MHCILTRRPTKPRHRSPPETPAVKRLPADSSATPSCILEKEILAMITLVRFRNLSYKFRNETDLIRCFHSGTNLKSNSPDSSSSTVAIFWDLDNKPPKSLPPYEAAVKLKAAAASFGAVRYMVAYANRHAFSYVPQVVREQRRERKMLNQLESKGVIKSIEPYLCRVCGRNFYTNEKLVNHFTQIHESEHKKRLNQIESAKGSRRVKLLAKYSMKIQKYKNAARDVLTPKVGYGLADELKRAGFFVKTVSDKPEAADVELRNDMVEIMDRKRAECLVLVSDDSDFVDVLKEARLRCLRTVVVGDFNDGPLKRNADTGFSWKEILMGKAKKEAVSVVGKWKDRDVLKRLEWTYNPQLEKKVFGLDDIGEDEDVEEGSVDGGLCKNMQNDDRGAWWDLSSDADTETVSPPSWK 411
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 5025002 5026293 - CrPI670011_10g005520.1 Cre10g0552 509854
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre10g0552 411 Gene3D - 77 323 - -
Cre10g0552 411 PANTHER C2H2-TYPE DOMAIN-CONTAINING PROTEIN 75 403 - -
Cre10g0552 411 ProSiteProfiles Zinc finger C2H2 type domain profile. 163 191 IPR013087 -
Cre10g0552 411 ProSitePatterns Zinc finger C2H2 type domain signature. 165 186 IPR013087 -
Cre10g0552 411 MobiDBLite consensus disorder prediction 1 29 - -
Cre10g0552 411 CDD PIN_LabA-like 173 304 - -
Cre10g0552 411 Pfam NYN domain 235 315 IPR021139 GO:0004540(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre05g2199 Cre-Chr5:33713498 Cre10g0552 Cre-Chr10:5025002 2.40E-58 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54489 PF01936 NYN 6.30E-10 CL0280 Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre10g0552 - - - 0.0