Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre10g0557 ATGCACCGTTCAATACCCACTTCCCATTTCTGCAAATTACTCGCCAATGGATACAGAACCCATCGTGGGTTTTGCTCATCCCATACCCATTCCCACTTCAACAACGCCGGTGGGTCAATGTCCGTTCGTTTGAACTCTCGCTCTGTCATTCGATTTCGGGGTCCCGACACCGTCAAGTTCCTTCACGGCCTATTGACCAACGATGTGCGGCGGTTTGGGGAACCCCCAAGTGACAAAACGTCGTCCTTGCCCACCCCCAATTTGGCGCCTGTGTCGGTCCCGCCTATGTATGCGGCTATGTTGACGCCACAGGGGAGGTTTTTGTATGATTTGTTTTTGTATAGGCCGCCTAAGCCTGAGGAGAAGCTTGATCGGACTGGCTCTGGGCCTGGTCCGGCCTCGGATGAGCCGGTGGAGTTGATGGCCGATGTGGATTCTTCTGTGTTGGATGAGCTTTTGGTGACGCTGAAGAAATACCGCTTAAGGTCCAAGGTTGATATTGAGAATATGGCAGAGGAGTTTTCTTGTTGGCAACGCTTTGGTGAAAAGCTCTCTAGAAAAGCTTCCTCTGCAGAGGAACCAGAGGCTGCCAGTGTTGGGTGGGGTGCTAGTGTTGATCCAACAGCAATGTCGGCTTCGCGTGGGGAAGACACTGGTTGGCAATGGTTTCAAGATCCAAGATTGGAATGCCTTGGTTTCAGAGGGATTTTTCCATCTAACAGAACGCCTCCCCTTATTGAGGCAGATAAAGAAACAGATGAAGATAATTATGTACTGTGGAGACTGGAGAAGGGAGTTGCAGAAGGTTCAACTGAGATTCAAAAAGGTGAGGCAATCCCTCTTGAATACAACCTGGTGGGTCTAAATGCAATAAGTTTTGACAAAGGGTGCTATGTGGGGCAAGAGCTTGTAGCTCGCACACACCACCGGGGAGTTATTCGGAAACGTGTGGTTCCTTTGAAGTTTCTAAATGACAGAGGGGAAGATGTAGAGCAGAAAGTATCGCCCGGGTCGGAAGTGATCAACTCTACATCCAACAAGAAAGCAGGTAATGTGATTGCTGCACTTGGGAGTCGTGGACTTGGTCTCTTGCGCTTGGAGGAAGCTTTCAGAGGATCTCAAAGTTTGGTCATACAAGGTCTCAAGGGCGTGACGGTTGAAGCTGGCAGACCGGATTGGTGGCCGGCTGAATGGTTTCAAGAGCATCAACAGCACAATACCGCTGGTGCATAG 1233 50.12 MHRSIPTSHFCKLLANGYRTHRGFCSSHTHSHFNNAGGSMSVRLNSRSVIRFRGPDTVKFLHGLLTNDVRRFGEPPSDKTSSLPTPNLAPVSVPPMYAAMLTPQGRFLYDLFLYRPPKPEEKLDRTGSGPGPASDEPVELMADVDSSVLDELLVTLKKYRLRSKVDIENMAEEFSCWQRFGEKLSRKASSAEEPEAASVGWGASVDPTAMSASRGEDTGWQWFQDPRLECLGFRGIFPSNRTPPLIEADKETDEDNYVLWRLEKGVAEGSTEIQKGEAIPLEYNLVGLNAISFDKGCYVGQELVARTHHRGVIRKRVVPLKFLNDRGEDVEQKVSPGSEVINSTSNKKAGNVIAALGSRGLGLLRLEEAFRGSQSLVIQGLKGVTVEAGRPDWWPAEWFQEHQQHNTAGA 410
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 5054266 5056432 - CrPI670011_10g005570.1 Cre10g0557 509859

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre10g0557 410 Gene3D Probable tRNA modification gtpase trme; domain 1 19 388 IPR027266 GO:0005515(InterPro)
Cre10g0557 410 FunFam Putative transferase, mitochondrial 22 390 - -
Cre10g0557 410 SUPERFAMILY Folate-binding domain 27 312 - -
Cre10g0557 410 NCBIfam folate-binding protein YgfZ 256 321 IPR017703 -
Cre10g0557 410 PANTHER UNCHARACTERIZED 27 401 IPR045179 GO:0005759(PANTHER)|GO:0016226(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre10g0557 K22073 - - csv:101203584 728.783
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g482 . Blo03g00177 Bda06g00050 . . Bpe07g00149 . . . Cmo16g01090 . . . . . Cpe14g00862 . . . . . . . . Cla10g00297 Cam10g0311 Cec10g0321 Cco10g0314 Clacu10g0308 Cmu10g1147 Cre10g0557 . . Cone6ag0710 Cone9ag0712 . . . . . . . . . . . Bma12g00143 . . . . Cma16g01042 . Car16g00993 . . . . . . . . . . . . . . . . . . Chy06g02004 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009813 1 0 1 3 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 32