Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre10g0580 ATGCTCACGGTTTATCTTGTCATGTTTGAAGATTCAATATCTCCAGTGTGGCTTGTGATTGAAAATCAGCAACAAAGAAAAAAATCGCTCTTAATGGCATTTCTAAGGTCCACCGCAACAACAACTAGCCTTGCCATAGCAGCATCTGCTTTACCTGCAGCTTTCATCTTCACCAGCCCTTCTTCTTCTTCTTCTTCTTCTTCCCTCCCTTTTCATTTCTTTCAATCCTTCAAACCCAATTCCCTTTCTTTACATTACTCTTCATTTCCAACTCCGAATTCCTTCGGATTCATAAGAAACTTTGCCCCTCCACCCTCTGCTGTTCGCATGGAGACACCCACCTTGGAATCAATCTCTTCCTCTCAGAACAATGTTGATTTTCCTGAACTTTTGACAGAGTATATGGTGGATATGAAATGTGAGGGCTGCGTTAATGCCGTCAAGAACAAGTTACAGGGTGTTGATGGTGTAAAGAGTGTTGATGTGGACTTGAGCAATCAAGTGGTTAGGATACTGGGCACAACACCTGTGAAGACAATGACTGAAGCTTTGGAGCAGACAGGTCGAAAAGCTCGGTTAATTGGGCAAGGGGTTCCTGAGGATTTCTTAGTTTCTGCTGCTGTTGCTGAATTTAAAGGCCCGAATATATTTGGCGTGGTTCGTTTGGCTCAGGTAAATATGGAATTGGCCAGGGTTGAAGCCAACTTTAGTGGATTGTCACCAGGAAAACATGGTTGGTCAATCAATGAATTTGGTGATCTGACAAGAGGCGCTGCTAGCACAGGAAAAATCTTTGGTTCTGCAGATTCTGGCCCTAGTAATGAGCCGCTGGGTGACCTGGGAACATTAGATGCTGATGAAAAGGGCGAAGCCTTTTTCTCTGGTGTCAAACAGAAGCTGCGAGTTTCTGATCTTATCGGACGATCAATAGCCGTGTATGAGACTGAAGACAAATCAGATCCAGGCATTGCAGCAGCGGTAGTAGCTCGAAGTGCTGGTGTCGGAGAGAACTACAAGAAGCTATGTACCTGTGATGGGACTACCATATGGGAATCAAGTAACATGGATTTTGTTACTAGCAAAGTCTAA 1089 44.08 MLTVYLVMFEDSISPVWLVIENQQQRKKSLLMAFLRSTATTTSLAIAASALPAAFIFTSPSSSSSSSSLPFHFFQSFKPNSLSLHYSSFPTPNSFGFIRNFAPPPSAVRMETPTLESISSSQNNVDFPELLTEYMVDMKCEGCVNAVKNKLQGVDGVKSVDVDLSNQVVRILGTTPVKTMTEALEQTGRKARLIGQGVPEDFLVSAAVAEFKGPNIFGVVRLAQVNMELARVEANFSGLSPGKHGWSINEFGDLTRGAASTGKIFGSADSGPSNEPLGDLGTLDADEKGEAFFSGVKQKLRVSDLIGRSIAVYETEDKSDPGIAAAVVARSAGVGENYKKLCTCDGTTIWESSNMDFVTSKV 362
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 5307629 5312600 - CrPI670011_10g005800.1 Cre10g0580 509882

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre10g0580 362 FunFam Copper chaperone for superoxide dismutase 122 199 - -
Cre10g0580 362 SUPERFAMILY Cu,Zn superoxide dismutase-like 195 353 IPR036423 GO:0006801(InterPro)|GO:0046872(InterPro)
Cre10g0580 362 Gene3D Superoxide dismutase, copper/zinc binding domain 200 330 IPR036423 GO:0006801(InterPro)|GO:0046872(InterPro)
Cre10g0580 362 PANTHER SUPEROXIDE DISMUTASE CU-ZN -RELATED 63 361 IPR024134 GO:0005507(InterPro)|GO:0005737(PANTHER)|GO:0016532(PANTHER)
Cre10g0580 362 Pfam Copper/zinc superoxide dismutase (SODC) 218 319 IPR001424 GO:0006801(InterPro)|GO:0046872(InterPro)
Cre10g0580 362 Pfam Heavy-metal-associated domain 135 190 IPR006121 GO:0046872(InterPro)
Cre10g0580 362 CDD HMA 133 192 IPR006121 GO:0046872(InterPro)
Cre10g0580 362 Gene3D - 121 199 - -
Cre10g0580 362 FunFam Copper chaperone for superoxide dismutase 203 330 - -
Cre10g0580 362 ProSiteProfiles Heavy-metal-associated domain profile. 129 192 IPR006121 GO:0046872(InterPro)
Cre10g0580 362 SUPERFAMILY HMA, heavy metal-associated domain 131 194 IPR036163 GO:0046872(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre10g0580 K04569 - - csv:101206552 551.592
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g438 . Blo03g00183 Bda06g00061 . . Bpe07g00137 . . . . . . . . . . . Bhi11g00229 . . . . . . Cla10g00318 Cam10g0333 Cec10g0347 Cco10g0339 Clacu10g0330 Cmu10g1170 Cre10g0580 . . Cone6ag0730 Cone9ag0734 Lsi07g01367 . . Cme06g02652 . . . . . . . Bma12g00113 . . . Cma06g00735 . Car06g00654 . Cpe08g00784 . . . . . . . . . . . . . . . . Csa03g00341 Chy06g01984 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009814 1 2 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 33