Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre10g0585 ATGGCTTCCCATTTCCCTCGTCGGAGCTTTGTCGCCGTCATCTTCTTCTTGTCGTTTACGATGCCAGAGATGACAATGAAATCGGTGCTCGCCATCTTTCGACCAAGCCCTTGGCAGCTCGCCCATGCCACCTTCTATGGTGATGAGACAGCATCAGAAACAATGGGAGGAGCTTGTGGTTATGGAAACTTGTTCACAAACGGCTACGGCGTCGACACGGTGGCTCTAAGCTCTACCCTCTTTAATAATGGCTACGCTTGTGGAACTTGCTTTCAAATCAAATGCGCCCAATCCAAAGCTTGTTACCCTAAGGTTGCTTTCACGACGGTGACAGCGACCAACCTTTGCCCGCCGAATTGGGCCAAACCTTCCAACGCCGGTGGATGGTGCAACCCACCAAGGGTTCACTTTGACATGTCAAAGCCAGCCTTCATGAAGATCGCCAACTGGAAGGCCGGGATCATCCCCGTCGCGTACCGACGAGTACCGTGCGGCAAAAAAGGTGGCCTTCGGTTCACACTTCAGGGAAATGGCTACTGGCTTTTGGCGTACGTGATGAACGTCGGCGGCGGCGGAGACGTGTCGGGAATGTGGGTGAAAGGTAGCAAAACAGCGTGGATCAAAATGAGCCATAATTGGGGAGCTTCATATCAAGCATTTTCAACTTTGGTTGGCCAATCTTTGTCTTTTAGAATCACTTCTTACACAACCAAAGAGACCATCACAGCTTGGAATGTTGCACCTTCTAATTGGAGGTTTGGTTCAACCTACAATGCCAACGTCAATTTTCGCTAA 795 50.31 MASHFPRRSFVAVIFFLSFTMPEMTMKSVLAIFRPSPWQLAHATFYGDETASETMGGACGYGNLFTNGYGVDTVALSSTLFNNGYACGTCFQIKCAQSKACYPKVAFTTVTATNLCPPNWAKPSNAGGWCNPPRVHFDMSKPAFMKIANWKAGIIPVAYRRVPCGKKGGLRFTLQGNGYWLLAYVMNVGGGGDVSGMWVKGSKTAWIKMSHNWGASYQAFSTLVGQSLSFRITSYTTKETITAWNVAPSNWRFGSTYNANVNFR 264
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 5344163 5345742 - CrPI670011_10g005850.1 Cre10g0585 509887
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre10g0585 264 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 56 169 IPR007112 -
Cre10g0585 264 CDD DPBB_EXPA_N 37 164 - -
Cre10g0585 264 Gene3D - 165 264 IPR036749 -
Cre10g0585 264 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 179 259 IPR007117 -
Cre10g0585 264 SMART dpbb_1 73 159 IPR007112 -
Cre10g0585 264 PRINTS Expansin signature 180 201 IPR002963 GO:0009664(InterPro)
Cre10g0585 264 PRINTS Expansin signature 168 180 IPR002963 GO:0009664(InterPro)
Cre10g0585 264 PRINTS Expansin signature 108 118 IPR002963 GO:0009664(InterPro)
Cre10g0585 264 PRINTS Expansin signature 144 157 IPR002963 GO:0009664(InterPro)
Cre10g0585 264 PRINTS Expansin signature 127 144 IPR002963 GO:0009664(InterPro)
Cre10g0585 264 PRINTS Expansin signature 68 82 IPR002963 GO:0009664(InterPro)
Cre10g0585 264 PRINTS Expansin signature 245 261 IPR002963 GO:0009664(InterPro)
Cre10g0585 264 Pfam Expansin C-terminal domain 171 248 IPR007117 -
Cre10g0585 264 PRINTS Expansin/Lol pI family signature 152 168 IPR007118 GO:0005576(InterPro)
Cre10g0585 264 PRINTS Expansin/Lol pI family signature 206 220 IPR007118 GO:0005576(InterPro)
Cre10g0585 264 PRINTS Expansin/Lol pI family signature 55 73 IPR007118 GO:0005576(InterPro)
Cre10g0585 264 PRINTS Expansin/Lol pI family signature 245 259 IPR007118 GO:0005576(InterPro)
Cre10g0585 264 PRINTS Expansin/Lol pI family signature 77 95 IPR007118 GO:0005576(InterPro)
Cre10g0585 264 PRINTS Expansin/Lol pI family signature 37 52 IPR007118 GO:0005576(InterPro)
Cre10g0585 264 Pfam Lytic transglycolase 73 159 IPR009009 -
Cre10g0585 264 SUPERFAMILY PHL pollen allergen 166 258 IPR036749 -
Cre10g0585 264 Gene3D - 23 164 IPR036908 -
Cre10g0585 264 SUPERFAMILY Barwin-like endoglucanases 29 187 IPR036908 -
Cre10g0585 264 PANTHER EXPANSIN-A15 23 259 IPR002963 GO:0009664(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre10g0585 Cre-Chr10:5344163 Cre11g1052 Cre-Chr11:7965287 1.60E-68 dispersed
Cre10g0585 Cre-Chr10:5344163 Cre09g2195 Cre-Chr9:41044988 9.20E-120 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre10g0585 - - - 0.0