Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre10g0600 ATGCTTATGGACCCTTCTTTCAATTCCTCTCACCAAGAACAACAACAAGAACAACAAGAACAAGATCAAGAAATTACCACTTCCAATCATTCTTTCCAAATGCGTCAATTACTAATCCGTTGTGCTCATTTCATTTCTCAATCTGATTTCCTATCAGCTCATCATCTTCTTTCAATTCTCTCTTCAAATTCCTCTCCTTATGGTGATTCCACTGAAAGATTACTTCATTACTTCTCTTCTTCCCTTTCTCATCGCCTCCCTTCAAATTCTTCTTTTGTTCATCATCATCATCATCATCATCATCAAGATAATGATGATGAGAGCAGGATTCAATCTTGTTACTTATCATTGAATCAAATCACACCCTTTATTAGATTTACTCATTTGACTGCAAATCAAGCCATTTTGGAAGGTATTGAAGAAAGTGGGATGATTCATGTTTTGGATTTTGATATTATGCATGGTGTTCAATGGCCTCCTCTTATGCAAGCTTTGGCTGATCGTTTTCCTTCTCCTATGCTTCGTATTACTGCTACTGGTCTTGATCTTAACTTCCTTCATAAGACTGGTGATAGGCTTTCTAAATTTGCTCAATCACTTGGTTTGAGGTTTCAGTTTCATCCTCTTCTTCTTCTTCATGATCGCGATCATCACCGTGTTATCCCCGCCGCTCTCACGCTCTTCCCCGACGAAGCTCTCGCCGTCAACTGCGTTCTCTACTTGCACAGGCTAATGAAGGAGGATGTTCGAGTATTGCTTCATAAAATCAAGGCTTTGAATCCAAAAGTGGTGACTATAGCTGAAAAGGAAGCAAATTTCAACCACCCATTATTCATGCAAAGATTTATAGAGGCATTGAATCATTACTCTTTAATATTTGATTCATTAGAAGCAACTTTGCCTCCAAATAGTAGGGAGAGATTGGCAGTGGAGCAAGTTTGGTTTAGGAGGGAAATAGACGACGTCGTTTCAGGAGAAGGGAATAAGAAGAGAAGGCAACACTATGAAAGGTATGAATCATGGGAAATAATGCTTAAAAGTTTGGGATTTTCTAATATTCCTTTAAGCCCTTTTGCTCTTTCACAAGCCAAACTTCTTCTTAGACTTCATTACCCTTCTGAAGGTTACCATCTTCAAATCCTTCATGATTCCCTTTTCCTTGGTTGGCAAAATCAACCCCTTTTTTCAGTCTCTTCATGGCATTGA 1206 38.64 MLMDPSFNSSHQEQQQEQQEQDQEITTSNHSFQMRQLLIRCAHFISQSDFLSAHHLLSILSSNSSPYGDSTERLLHYFSSSLSHRLPSNSSFVHHHHHHHHQDNDDESRIQSCYLSLNQITPFIRFTHLTANQAILEGIEESGMIHVLDFDIMHGVQWPPLMQALADRFPSPMLRITATGLDLNFLHKTGDRLSKFAQSLGLRFQFHPLLLLHDRDHHRVIPAALTLFPDEALAVNCVLYLHRLMKEDVRVLLHKIKALNPKVVTIAEKEANFNHPLFMQRFIEALNHYSLIFDSLEATLPPNSRERLAVEQVWFRREIDDVVSGEGNKKRRQHYERYESWEIMLKSLGFSNIPLSPFALSQAKLLLRLHYPSEGYHLQILHDSLFLGWQNQPLFSVSSWH 401
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 5536234 5537888 - CrPI670011_10g006000.1 Cre10g0600 509902

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre10g0600 401 Pfam GRAS domain family 34 400 IPR005202 -
Cre10g0600 401 MobiDBLite consensus disorder prediction 1 26 - -
Cre10g0600 401 ProSiteProfiles GRAS family profile. 25 401 IPR005202 -
Cre10g0600 401 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 18 400 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0010014(PANTHER)|GO:0043565(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre10g0600 K27746 - - csv:101213853 675.241
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre10g0600 Cre-Chr10:5536234 Cre11g1204 Cre-Chr11:9983798 7.30E-60 dispersed
Cre10g0600 Cre-Chr10:5536234 Cre10g2227 Cre-Chr10:36712493 1.60E-35 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g799 . . . . . . . . Cmo16g01054 . . . . . . . . . . . . . . . Cla10g00339 Cam10g0352 Cec10g0366 Cco10g0360 Clacu10g0353 Cmu10g1189 Cre10g0600 . . . . . Csa03g00359 . Cme06g02676 . Blo10g00896 . . . . . . Sed08g2851 . . . . . . Cpe14g00831 . Bhi11g00376 Tan01g1930 Cmetu06g2650 . Hepe06g1220 Mch10g1457 . . . . . . . . . . Chy06g01964 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cre10g2227 . 74 740 GRAS Transcription Factor Family AT2G37650 54.3 3.1e-194 675.6
Cre03g0450 . 314 696 GRAS Transcription Factor Family AT3G46600 56.7 3.6e-126 449.1
Cre04g1365 . 50 468 GRAS Transcription Factor Family AT3G49950 60.2 2.4e-135 479.2
Cre10g0519 . 490 859 GRAS Transcription Factor Family AT3G60630 51.0 2.3e-92 337.0
Cre07g1453 . 21 443 GRAS Transcription Factor Family AT5G41920 64.8 3.6e-147 518.5
Cre07g1288 . 1 608 GRAS Transcription Factor Family AT5G66770 57.4 1.2e-172 603.6
Cre04g1560 . 160 728 GRAS Transcription Factor Family AT5G66770 54.6 8.5e-150 527.7
Cre10g0686 . 45 544 GRAS Transcription Factor Family AT1G50600 58.5 8.7e-162 567.4
Cre02g1271 . 57 532 GRAS Transcription Factor Family AT1G50600 58.0 5.3e-151 531.6
Cre04g1759 . 111 548 GRAS Transcription Factor Family AT1G50600 56.9 1.5e-142 503.4
Cre10g0621 . 1 634 GRAS Transcription Factor Family AT1G63100 50.7 6.8e-164 574.7
Cre09g1895 . 44 581 GRAS Transcription Factor Family AT1G14920 67.7 1.3e-205 713.0
Cre03g1154 . 47 596 GRAS Transcription Factor Family AT1G14920 62.0 4.8e-184 641.3
Cre05g1321 . 32 555 GRAS Transcription Factor Family AT1G14920 56.5 1.3e-157 553.5
Cre10g0600 . 34 400 GRAS Transcription Factor Family AT1G55580 51.6 2.0e-103 373.2
Cre03g1154 . 47 593 GRAS Transcription Factor Family AT1G66350 60.5 4.2e-177 618.2
Cre09g1895 . 1 579 GRAS Transcription Factor Family AT1G66350 56.6 1.1e-172 603.6
Cre05g1321 . 1 554 GRAS Transcription Factor Family AT1G66350 56.0 8.5e-162 567.4
Cre02g2309 . 251 771 GRAS Transcription Factor Family AT1G07520 50.7 7.7e-142 501.1
Cre02g1271 . 19 532 GRAS Transcription Factor Family AT5G48150 63.3 9.6e-179 623.6
Cre10g0686 . 17 544 GRAS Transcription Factor Family AT5G48150 59.2 1.4e-174 609.8
Cre04g1759 . 16 548 GRAS Transcription Factor Family AT5G48150 52.0 1.7e-151 533.1
Cre09g1895 . 46 578 GRAS Transcription Factor Family AT2G01570 68.6 1.7e-211 732.6
Cre03g1154 . 48 594 GRAS Transcription Factor Family AT2G01570 63.1 1.2e-188 656.8
Cre05g1321 . 31 555 GRAS Transcription Factor Family AT2G01570 58.4 8.8e-163 570.9
Cre03g1154 . 47 593 GRAS Transcription Factor Family AT1G66350 60.5 4.2e-177 618.2
Cre09g1895 . 1 579 GRAS Transcription Factor Family AT1G66350 56.6 1.1e-172 603.6
Cre05g1321 . 1 554 GRAS Transcription Factor Family AT1G66350 56.0 8.5e-162 567.4
Cre03g1154 . 48 594 GRAS Transcription Factor Family AT3G03450 62.6 2.4e-178 622.5
Cre09g1895 . 10 578 GRAS Transcription Factor Family AT3G03450 58.2 2.8e-171 599.0
Cre05g1321 . 31 555 GRAS Transcription Factor Family AT3G03450 58.5 2.2e-160 562.8
Cre03g1154 . 47 596 GRAS Transcription Factor Family AT5G17490 56.4 2.6e-158 555.8
Cre09g1895 . 42 578 GRAS Transcription Factor Family AT5G17490 57.3 2.7e-155 545.8
Cre05g1321 . 28 555 GRAS Transcription Factor Family AT5G17490 53.1 4.6e-139 491.9
Cre09g0930 . 1 570 GRAS Transcription Factor Family AT1G21450 57.6 1.3e-174 610.1
Cre10g0686 . 168 544 GRAS Transcription Factor Family AT1G21450 52.9 1.8e-115 413.7
Cre03g0450 . 322 696 GRAS Transcription Factor Family AT5G59450 56.7 5.6e-128 455.3
Cre10g2227 . 369 740 GRAS Transcription Factor Family AT5G59450 54.1 2.1e-114 410.2
Cre04g1759 . 1 548 GRAS Transcription Factor Family AT4G17230 58.4 3.7e-176 615.1
Cre10g0686 . 60 544 GRAS Transcription Factor Family AT4G17230 52.2 3.1e-135 479.2
Cre02g1271 . 134 532 GRAS Transcription Factor Family AT2G04890 64.4 2.1e-147 519.2
Cre10g0686 . 166 544 GRAS Transcription Factor Family AT2G04890 62.5 1.6e-142 503.1
Cre04g1759 . 169 548 GRAS Transcription Factor Family AT2G04890 58.2 3.0e-125 445.7
Cre03g1575 . 1 471 GRAS Transcription Factor Family AT1G50420 66.9 6.1e-178 620.9
Cre05g2260 . 49 469 GRAS Transcription Factor Family AT1G50420 60.2 4.7e-138 488.4
Cre06g1069 . 472 837 GRAS Transcription Factor Family AT4G00150 60.2 5.5e-122 435.3
Cre10g0519 . 496 859 GRAS Transcription Factor Family AT4G00150 55.4 3.0e-104 376.3
Cre07g1288 . 1 608 GRAS Transcription Factor Family AT3G50650 52.1 1.5e-148 523.5
Cre07g1453 . 73 441 GRAS Transcription Factor Family AT3G54220 64.0 8.6e-135 478.0
Cre04g1376 . 104 495 GRAS Transcription Factor Family AT4G37650 67.8 1.0e-157 553.9
Cre02g1577 . 106 496 GRAS Transcription Factor Family AT4G37650 56.4 4.7e-123 438.7
Cre06g0871 . 64 455 GRAS Transcription Factor Family AT4G37650 50.7 1.2e-110 397.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008597 1 1 1 0 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54490 PF03514 GRAS 5.60E-118 CL0063 Cre TF