Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre10g0600 ATGCTTATGGACCCTTCTTTCAATTCCTCTCACCAAGAACAACAACAAGAACAACAAGAACAAGATCAAGAAATTACCACTTCCAATCATTCTTTCCAAATGCGTCAATTACTAATCCGTTGTGCTCATTTCATTTCTCAATCTGATTTCCTATCAGCTCATCATCTTCTTTCAATTCTCTCTTCAAATTCCTCTCCTTATGGTGATTCCACTGAAAGATTACTTCATTACTTCTCTTCTTCCCTTTCTCATCGCCTCCCTTCAAATTCTTCTTTTGTTCATCATCATCATCATCATCATCATCAAGATAATGATGATGAGAGCAGGATTCAATCTTGTTACTTATCATTGAATCAAATCACACCCTTTATTAGATTTACTCATTTGACTGCAAATCAAGCCATTTTGGAAGGTATTGAAGAAAGTGGGATGATTCATGTTTTGGATTTTGATATTATGCATGGTGTTCAATGGCCTCCTCTTATGCAAGCTTTGGCTGATCGTTTTCCTTCTCCTATGCTTCGTATTACTGCTACTGGTCTTGATCTTAACTTCCTTCATAAGACTGGTGATAGGCTTTCTAAATTTGCTCAATCACTTGGTTTGAGGTTTCAGTTTCATCCTCTTCTTCTTCTTCATGATCGCGATCATCACCGTGTTATCCCCGCCGCTCTCACGCTCTTCCCCGACGAAGCTCTCGCCGTCAACTGCGTTCTCTACTTGCACAGGCTAATGAAGGAGGATGTTCGAGTATTGCTTCATAAAATCAAGGCTTTGAATCCAAAAGTGGTGACTATAGCTGAAAAGGAAGCAAATTTCAACCACCCATTATTCATGCAAAGATTTATAGAGGCATTGAATCATTACTCTTTAATATTTGATTCATTAGAAGCAACTTTGCCTCCAAATAGTAGGGAGAGATTGGCAGTGGAGCAAGTTTGGTTTAGGAGGGAAATAGACGACGTCGTTTCAGGAGAAGGGAATAAGAAGAGAAGGCAACACTATGAAAGGTATGAATCATGGGAAATAATGCTTAAAAGTTTGGGATTTTCTAATATTCCTTTAAGCCCTTTTGCTCTTTCACAAGCCAAACTTCTTCTTAGACTTCATTACCCTTCTGAAGGTTACCATCTTCAAATCCTTCATGATTCCCTTTTCCTTGGTTGGCAAAATCAACCCCTTTTTTCAGTCTCTTCATGGCATTGA 1206 38.64 MLMDPSFNSSHQEQQQEQQEQDQEITTSNHSFQMRQLLIRCAHFISQSDFLSAHHLLSILSSNSSPYGDSTERLLHYFSSSLSHRLPSNSSFVHHHHHHHHQDNDDESRIQSCYLSLNQITPFIRFTHLTANQAILEGIEESGMIHVLDFDIMHGVQWPPLMQALADRFPSPMLRITATGLDLNFLHKTGDRLSKFAQSLGLRFQFHPLLLLHDRDHHRVIPAALTLFPDEALAVNCVLYLHRLMKEDVRVLLHKIKALNPKVVTIAEKEANFNHPLFMQRFIEALNHYSLIFDSLEATLPPNSRERLAVEQVWFRREIDDVVSGEGNKKRRQHYERYESWEIMLKSLGFSNIPLSPFALSQAKLLLRLHYPSEGYHLQILHDSLFLGWQNQPLFSVSSWH 401
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 5536234 5537888 - CrPI670011_10g006000.1 Cre10g0600 509902
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre10g0600 401 Pfam GRAS domain family 34 400 IPR005202 -
Cre10g0600 401 MobiDBLite consensus disorder prediction 1 26 - -
Cre10g0600 401 ProSiteProfiles GRAS family profile. 25 401 IPR005202 -
Cre10g0600 401 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 18 400 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0010014(PANTHER)|GO:0043565(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre10g0600 Cre-Chr10:5536234 Cre11g1204 Cre-Chr11:9983798 7.30E-60 dispersed
Cre10g0600 Cre-Chr10:5536234 Cre10g2227 Cre-Chr10:36712493 1.60E-35 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54490 PF03514 GRAS 5.60E-118 CL0063 Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre10g0600 K27746 - csv:101213853 675.241