Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre10g0616 ATGGCCTCCACCTCCTCCAAGAGACATGATCACTACAAAGGAATCCGCTGCCGCAGCGGCAAATGGGTGTCCGAGATTCGTGAGCCACGTAAGACTACCCGAATATGGCTCGGTACCTACCCTACGCCGGAGATGGCTGCTGCCGCCTACGATGTCGCCGCACTCGCACTCAAGGGTTGCAATGCTGTTCTCAACTTCCCGGAATTGATTGCCTCCTACCCGGTTCCGGCTTCCTCATCCCCAGCCGATATCCGATTTTCTGCCGCTGCTGCTGCTGCGTTGAAAAAAGTTGATGATCAAGGAGAAAACACTGACCATAGCTTTCACCACCAGTCTCCGCCAACCAATGAGTTTGTCGACGAAGAGGCGCTGTTCGGAATGCCGAATCTGCTTGTTGACATGGCCGAGGGAATGCTGTTGTCGCCACCACGAATGAGCTCCTCGCCCTCCCGACATGACTACTACTCATGGAACTCAAGTGGAGATGGAAATCTTTGGAGCTACCACTAG 510 54.31 MASTSSKRHDHYKGIRCRSGKWVSEIREPRKTTRIWLGTYPTPEMAAAAYDVAALALKGCNAVLNFPELIASYPVPASSSPADIRFSAAAAAALKKVDDQGENTDHSFHHQSPPTNEFVDEEALFGMPNLLVDMAEGMLLSPPRMSSSPSRHDYYSWNSSGDGNLWSYH 169
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 5707220 5707729 - CrPI670011_10g006160.1 Cre10g0616 509918
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre10g0616 169 CDD AP2 11 69 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre10g0616 169 Gene3D AP2/ERF domain 10 68 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre10g0616 169 SMART rav1_2 11 73 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre10g0616 169 SUPERFAMILY DNA-binding domain 11 68 IPR016177 GO:0003677(InterPro)
Cre10g0616 169 ProSiteProfiles AP2/ERF domain profile. 11 67 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre10g0616 169 FunFam Ethylene-responsive transcription factor 2 10 68 - -
Cre10g0616 169 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 6 168 IPR045277 GO:0003700(InterPro)
Cre10g0616 169 Pfam AP2 domain 11 59 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre05g0964 Cre-Chr5:8878733 Cre10g0616 Cre-Chr10:5707220 3.90E-43 dispersed
Cre09g2210 Cre-Chr9:41270596 Cre10g0616 Cre-Chr10:5707220 3.10E-48 dispersed
Cre10g0616 Cre-Chr10:5707220 Cre10g2040 Cre-Chr10:35113019 4.50E-35 dispersed
Cre10g0616 Cre-Chr10:5707220 Cre04g1074 Cre-Chr4:29446018 2.90E-34 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54491 PF00847 AP2 5.60E-11 CL0081 Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre10g0616 - - - 0.0