Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre10g0618 ATGGGTCTCAATTTCTCTGTTTTTTTCCGCCTCCATAATGGCTCTCAGCCCCCGCCGCCGCCGCCTTTTCCCGGTCTCGGCGACTTGCCGGAGAGCTGTGCGGCTGATGTTTTGAAGTATTTGAGTCCGGTCGAGATTTGTAAACTTGCCAACATGAATCGGGCTTTTCGTTGGGCGTCTTGGGCTGATTTCGTTTGGGATTCTAAATTGCCTCCTAATTATAGGGTTCTTGTTCAGCGATTGATTGGGGATGTTGCTTCGATTATGTGTAAAAGAGAGATTTATACGAGACTTTGTCAGCAGAATCGATTAGATGGTGGAAATAAGAATGTTTGGCTGGATAAATATTCAGGTGGTGTTTGCTTATCGATTTCTTCAATGGATTTGAGGATTACTGGGATTGATGATCGGAGGTATTGGAATCGCATCTCGACTGAAGAATCAAGATTCCACACTGTTGCATATCTTCAGCAAATATGGTGGTTTGAAGTTGGTGGAGAGGTAGAGTTTCCGTTTCCACCAGGAACTTACAGCCTATACTTCAGGTTGCAATTGGGTCGGACATCGAAGAGGTTTGGCCGTCGAATCTATAACCTCGAGCACGTTCATGGTTGGAACATAAAGCCCGTGCAATTCCAGCTTTGGACTTCAGATGGTCAGCATGCCAAAACTCAATGCTATTTAGACGAAGCTGGGAAATGGACTCTGCATCATGCAGGTAACTTCAATGTCGATGCTCGAAACGAATCGATGAGGATCAAATTCTCTATGACTCAGATCGACTGCACGCACACAAAAGGTGGCCTCTGTTTAGATTCAGTGCTGATTTACCCAGTCGAGTATGCGCAGAGATCCGAGCATCATTGA 867 45.56 MGLNFSVFFRLHNGSQPPPPPPFPGLGDLPESCAADVLKYLSPVEICKLANMNRAFRWASWADFVWDSKLPPNYRVLVQRLIGDVASIMCKREIYTRLCQQNRLDGGNKNVWLDKYSGGVCLSISSMDLRITGIDDRRYWNRISTEESRFHTVAYLQQIWWFEVGGEVEFPFPPGTYSLYFRLQLGRTSKRFGRRIYNLEHVHGWNIKPVQFQLWTSDGQHAKTQCYLDEAGKWTLHHAGNFNVDARNESMRIKFSMTQIDCTHTKGGLCLDSVLIYPVEYAQRSEHH 288
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 5730922 5732762 - CrPI670011_10g006180.1 Cre10g0618 509920

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre10g0618 288 SUPERFAMILY F-box domain 16 99 IPR036047 GO:0005515(InterPro)
Cre10g0618 288 CDD F-box_AtSKIP3-like 26 71 - -
Cre10g0618 288 PANTHER F-BOX PROTEIN PP2-A15 24 283 - -
Cre10g0618 288 Pfam Phloem protein 2 120 278 IPR025886 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre10g0618 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre05g0265 Cre-Chr5:2493419 Cre10g0618 Cre-Chr10:5730922 6.80E-85 dispersed
Cre09g1969 Cre-Chr9:38664491 Cre10g0618 Cre-Chr10:5730922 3.30E-83 dispersed
Cre10g0618 Cre-Chr10:5730922 Cre10g2061 Cre-Chr10:35303269 3.60E-69 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g396 . . Bda06g00074 . . Bpe07g00125 . . Cmo06g01134 Cmo16g01048 . . . . . . . . . . . . . . Cla10g00351 Cam10g0363 Cec10g0381 Cco10g0376 Clacu10g0367 Cmu10g1203 Cre10g0618 . . . . Lsi07g01414 . . Cme06g02700 . . . . . . . Bma12g00101 . . . Cma06g01106 Cma16g01005 Car06g00943 . Cpe08g00511 . . . . . . . . . . . . . . . . Csa03g00373 Chy06g01940 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001664 6 3 1 3 3 2 3 2 2 2 2 2 2 2 2 3 2 3 3 2 2 2 2 2 2 2 1 3 2 2 70