Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre10g0621 ATGTTGGCTGGGTGTTCTAGTTCAACATTGCTCTCGCCAAGGAATCGATTGAGAAGTGAAGCACAGCCGCCATTTCCAGCTTGCCATTTGCAGTTGCCCACTTCAATGAGCACACAGAGATTGGATTTGCCCTGCAGCTTTTCCCGTTCTAAAGACACCTCTGCCACTGCCCGATCCCCGTCAATCCGCCCGGTTGCACTCTCCGTCGAGAAGCAGAACATCAGGCTCCCGCCGTTATCCGCCACCAACCAGCAGATCAAGCAAGAGTTTTGGAATGGGAAAGGTAAGAACTTGAAGAGAATTGCAGAGCAAGTTGGGTTTGATGATGATGATTCTTCCATTAACAGCGCCAAGAGGAAGAGAGAGTGCAGAGACGACGCCGGAGATGGACTAATTCTAAGCCAATTCGGCGGTGGGGGTGGGAGTTTCTGGTTTCATCAGCCTGATGGGGATGAAGAAGGAATCTGTTTTCTTCCTGGAAGTGAAGTAATTTCTTCGCCATCGCCGTTTTTTTCAGAGATCGCCGACTTCGGAGAAGGAAATGATGGAGAAAGCAGCCATGTAAAGGCTCAGGAAGGCTCCGGTTCGGGTTCAGGGTCGAGTTCATCATCAGAAAGTGAGAGATTTGCATTGAGAAGCAGAGTAACAACAGAGAATGTTTCAGCAGCACCAACAACAGTGCCAGAAATTGGGAATGGAAGCTCAAGAAATCCTTCATATCATCACCATCAAGGTTCTGGTTTAGAGAATGAAAGGGAAGAAGAAGAAGGGTTTGAGCTGATAAGTCTTCTAATGGCATGTGTAGAAGCAATTGGATCAAAGAACATTGGTTTGATTAACCATTTGATAGATAAACTTGGGAGTCAAGCTTCACCAAGAGGCTCATCACCAATTACACGTTTGATTGCATATTACACAGAGGCTTTAGCAGTTAGAGTGAGCAGAGTTTGGCCACAGGTTTTTCACATAACGACACCAAGGGAATACGATCGGATGGAGGACGATACGGGGACAGCACTACGGCTGCTAAACGAGGTGAGCCCGATCCCGAAATTCATCCACTTCACAGCAAATGAGATGTTGCTAAGAGCATTTGAAGGGAAAGACAGGGTTCACATCATAGACTTTGACATAAAGCAAGGGCTGCAATGGCCAAGCTTGTTCCAAAGTTTGGCATCTAGAACAAACCCTCCAAGTCATGTGCGAATCACTGGGATCGGTGAGTCAAAGCAGGAATTGAACGAAACGGGAGATAGGCTAGCAGGGTTCGCCGAGGCATTGAGGCTGCCGTTCGAGTTTCATGCCGTGGTGGACCGGTTGGAGGATGTGAGACTGTGGATGCTTCATGTCAAGGAGCAAGAAAGTGTAGGAGTGAATTGCATGCTCCAACTTCACAAGACACTGTACGATGGCAATGGAGGAGCATTGAGGGACTTTTTGGGGCTCATAAGAAGCACAAACCCAAGTATTGTTGTCATGGCTGAGCAAGAAGCCGAGCACAACGAACCGAGGTTAGAGAGTCGAGTTGCAGCCACATTGAAGTACTACGCTGCCATATTCGATTCCCTCGATGCTAGTCTTCCACCCGATAGCTCAGCCAGGTTGAAAATTGAGGACATGTTTGGGAGGGAGATAAGGAACATGATAGCATGTGAAGGAAGGGAGAGATATGAAAGACATGTTGGATTTAAGAAATGGAAGAAGGATATGGAGCAGCAAGGAGGTCTGCAATGCGTTGGGATTTGCGACGATCGAGAGCTTCTTCAGACTCAATTCCTCTTGAAAATGTACTCATCAGCTCATGGATTCAATGTCACAAAGATTGAAGAAGAAGAAGGAGCAGCTCAAGCAATTTGCCTAACTTGGGAAGATCAGCCACTTTACACTGTCTCAGCTTGGTCAGCAGCAGAAGTTTCTGGAAGTTCATCTTCATTTAACCATCCAACTTCTTGA 1953 47.0 MLAGCSSSTLLSPRNRLRSEAQPPFPACHLQLPTSMSTQRLDLPCSFSRSKDTSATARSPSIRPVALSVEKQNIRLPPLSATNQQIKQEFWNGKGKNLKRIAEQVGFDDDDSSINSAKRKRECRDDAGDGLILSQFGGGGGSFWFHQPDGDEEGICFLPGSEVISSPSPFFSEIADFGEGNDGESSHVKAQEGSGSGSGSSSSSESERFALRSRVTTENVSAAPTTVPEIGNGSSRNPSYHHHQGSGLENEREEEEGFELISLLMACVEAIGSKNIGLINHLIDKLGSQASPRGSSPITRLIAYYTEALAVRVSRVWPQVFHITTPREYDRMEDDTGTALRLLNEVSPIPKFIHFTANEMLLRAFEGKDRVHIIDFDIKQGLQWPSLFQSLASRTNPPSHVRITGIGESKQELNETGDRLAGFAEALRLPFEFHAVVDRLEDVRLWMLHVKEQESVGVNCMLQLHKTLYDGNGGALRDFLGLIRSTNPSIVVMAEQEAEHNEPRLESRVAATLKYYAAIFDSLDASLPPDSSARLKIEDMFGREIRNMIACEGRERYERHVGFKKWKKDMEQQGGLQCVGICDDRELLQTQFLLKMYSSAHGFNVTKIEEEEGAAQAICLTWEDQPLYTVSAWSAAEVSGSSSSFNHPTS 650
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 5760946 5762898 + CrPI670011_10g006210.1 Cre10g0621 509923
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre10g0621 650 MobiDBLite consensus disorder prediction 1 20 - -
Cre10g0621 650 MobiDBLite consensus disorder prediction 1 16 - -
Cre10g0621 650 MobiDBLite consensus disorder prediction 169 253 - -
Cre10g0621 650 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 233 633 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
Cre10g0621 650 MobiDBLite consensus disorder prediction 187 244 - -
Cre10g0621 650 Pfam GRAS domain family 261 633 IPR005202 -
Cre10g0621 650 ProSiteProfiles GRAS family profile. 251 634 IPR005202 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre10g0621 Cre-Chr10:5760946 Cre11g1204 Cre-Chr11:9983798 2.00E-67 dispersed
Cre10g0621 Cre-Chr10:5760946 Cre04g1560 Cre-Chr4:34204842 1.60E-40 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54492 PF03514 GRAS 7.30E-122 CL0063 Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre10g0621 K27749 - csv:101209060 1140.18