Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre10g0647 ATGCGAAAGCCCACCATTTCAGGAAAGAAAAATCCTTCTAGTTGTTCTCCTCTTGCTCCTAACAATTCCCCACCAGCTAAAGCTATTTGTGCAAGGATGACCGATCGACGACAACCGAAGCTTCTCTTTTGGTTTCTTCCACTGCAGGCTAAGTCTTCGCGAAAATTTTGCTACCCTGAGTTGGCTTCAAGTCTCTTCAACCTTTTTTGCTTTGCTTTTATCTGCTATTTACGGTTTCAAGTTGCTAAAAGAATGTTGGAGAGTTTTGCTTACAAGAGCGTGAAGATTGTAATCTTCACAAATAAACTCAACTTCCTGATGCCTTTTGGGCCTCTAGCAATTCTTGTGGATAAGTTGGCTGGACACAATAGTTGGGTCTTCTTCCTGAGTCTATTGGGTATCATACCATTGGCTGAGCGGTTAGGTTATGCGACAGAGCAGCTAGCTTTTTACACTGGTCCTACAGCTGGTGGTCTACTAAATGCTACTTTTGGAAATGCAACAGAGCTGATTATATCAATTTTTGCCCTGAGAAGTCAAATGATACGTGTTGTTCAGCTATCATTACTAGGCTCAATTCTGTCGAACATGTTGCTGGTGCTTGGTTGTGCATTCTTCTGTGGTGGGATTGTTTTCTATAAAAAGGAACAGACCTTTAACAAGGCAATTGCTGTTGTCAACTCAGGGTTGTTGTTAATGGCTGTCATGGGCCTGCTTTTTCCCGCTCTTCTCCACTACACCCACAGTGAAGCCCATTTTGGGAAGTCGGAATTGGCACTTTCAAGATTCAGCAGTTGCATTATGCTTCTGGCTTATGCTGCTTATCTTTTCTTCCAATTGAAAAGCCAGACGAATCTTTATTCTTCCGTTTATGAGGAAGAAATTCAGAGTGAAGAAAGCTCAGATGAAGATGAAGCTCCTGAGATCTCCAAGTGGGAATCAGTTATCTGGCTATCAATTTTGACTGCCTGGATCTCTGTTCTATCAAAATATCTGGTCGATGCAATCGAAATTGCATCTGAATCATTGAAAATCCCAGTGTCGTTTATTAGTGTTGTACTGCTTCCAATTGTGGGGAATGCCGCTGAGCATGCAAGTGCAATTATGTTTGCTATGAAAGATAAGCTTGATATTTCTCTGGGTGTAGCTATTGGATCATCAACCCAGATATCTATGTTTGGGATTCCTTTCTGTGTGGTAACTGGGTGGATTATGGGACAACCAATGGACTTAAACTTCCAACTCTTCGAGACGGCAACACTTTTTATAACTGTAATTGTCGTAGCTTTCTTGCTCCAGGAAGGAACTTCAAATTACTTCAAGGGACTGATGCTCATCCTTTGTTATCTGATAGTTGCTGCTAGTTTTTTCGTGCACGTCGATCCTCCTTTACCCGAGAATAAACTGGGGAGTCTGAAAGCGTAG 1425 41.96 MRKPTISGKKNPSSCSPLAPNNSPPAKAICARMTDRRQPKLLFWFLPLQAKSSRKFCYPELASSLFNLFCFAFICYLRFQVAKRMLESFAYKSVKIVIFTNKLNFLMPFGPLAILVDKLAGHNSWVFFLSLLGIIPLAERLGYATEQLAFYTGPTAGGLLNATFGNATELIISIFALRSQMIRVVQLSLLGSILSNMLLVLGCAFFCGGIVFYKKEQTFNKAIAVVNSGLLLMAVMGLLFPALLHYTHSEAHFGKSELALSRFSSCIMLLAYAAYLFFQLKSQTNLYSSVYEEEIQSEESSDEDEAPEISKWESVIWLSILTAWISVLSKYLVDAIEIASESLKIPVSFISVVLLPIVGNAAEHASAIMFAMKDKLDISLGVAIGSSTQISMFGIPFCVVTGWIMGQPMDLNFQLFETATLFITVIVVAFLLQEGTSNYFKGLMLILCYLIVAASFFVHVDPPLPENKLGSLKA 474
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 6088277 6094508 + CrPI670011_10g006470.1 Cre10g0647 509949
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre10g0647 474 MobiDBLite consensus disorder prediction 1 21 - -
Cre10g0647 474 MobiDBLite consensus disorder prediction 7 21 - -
Cre10g0647 474 FunFam Vacuolar cation/proton exchanger 302 458 - -
Cre10g0647 474 NCBIfam calcium/proton exchanger 107 457 IPR004798 GO:0006816(InterPro)|GO:0015369(InterPro)
Cre10g0647 474 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 81 462 IPR004713 GO:0006812(InterPro)|GO:0006874(PANTHER)|GO:0008324(InterPro)|GO:0009705(PANTHER)|GO:0015369(PANTHER)|GO:0016020(InterPro)|GO:0070588(PANTHER)
Cre10g0647 474 Pfam Sodium/calcium exchanger protein 314 456 IPR004837 GO:0016020(InterPro)|GO:0055085(InterPro)
Cre10g0647 474 Pfam Sodium/calcium exchanger protein 125 280 IPR004837 GO:0016020(InterPro)|GO:0055085(InterPro)
Cre10g0647 474 Gene3D - 154 296 IPR044880 -
Cre10g0647 474 Gene3D - 301 458 IPR044880 -
Cre10g0647 474 FunFam Vacuolar cation/proton exchanger 154 293 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g1361 Cre-Chr2:21588448 Cre10g0647 Cre-Chr10:6088277 3.60E-158 dispersed
Cre03g0393 Cre-Chr3:2385772 Cre10g0647 Cre-Chr10:6088277 9.00E-87 dispersed
Cre07g1780 Cre-Chr7:33261431 Cre10g0647 Cre-Chr10:6088277 1.60E-152 dispersed
Cre10g0647 Cre-Chr10:6088277 Cre10g2310 Cre-Chr10:37336169 3.30E-91 dispersed
Cre10g0647 Cre-Chr10:6088277 Cre04g0802 Cre-Chr4:26701840 2.00E-93 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre10g0647 K07300 - csv:101205761 642.499