Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cre10g0657 | ATGGCTGACTCCGACAACGATTCCGGCGGCGGCTACCAGAAATCTCCCTCTCCACGTGAGCACGACAGACTCCTTCCCATCGCCAACGTCGGCCGGATCATGAAAAAGGCTCTCCCTGGGAACGCCAAGATCTCAAAGGACGCCAAAGAAACCGTCCAAGAATGCGTCTCTGAGTTTATCAGCTTCGTCACCGGCGAAGCCTCCGACAAGTGCCACAACGAGAAGCGTAAGACGATCAACGGCGACGATTTGCTCTGGGCTATGGCGACTTTAGGGTTCGAAGACTATGTCGATCCTCTCAAGCTTTATCTCCAACGGTTTCGAGAAATTGAAGGCGAGAGGACCACGCTTGCCTCACGTGACTCCGCCTCCGCCGCCAACCCCGCCGGAGCTACGAATAGTACGTTTTTCGACGGCGGTGGGGAATTTGGGGGTGGGATGGGGATGACCATGCCTCCGAATGTTTATGGTTCTAATGGGCCGCGTTGGGATGGGCCTGGGTTTACTACTACGGGTCGGCCCAGGTAG | 528 | 56.44 | MADSDNDSGGGYQKSPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKETVQECVSEFISFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLYLQRFREIEGERTTLASRDSASAANPAGATNSTFFDGGGEFGGGMGMTMPPNVYGSNGPRWDGPGFTTTGRPR | 175 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 6228589 | 6229116 | + | CrPI670011_10g006570.1 | Cre10g0657 | 509959 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cre10g0657 | 175 | Pfam | Histone-like transcription factor (CBF/NF-Y) and archaeal histone | 24 | 88 | IPR003958 | - | |
Cre10g0657 | 175 | SUPERFAMILY | Histone-fold | 22 | 123 | IPR009072 | GO:0046982(InterPro) | |
Cre10g0657 | 175 | Gene3D | Histone, subunit A | 11 | 135 | IPR009072 | GO:0046982(InterPro) | |
Cre10g0657 | 175 | PRINTS | CCAAT-binding transcription factor subunit A signature | 52 | 70 | - | - | |
Cre10g0657 | 175 | PRINTS | CCAAT-binding transcription factor subunit A signature | 90 | 108 | - | - | |
Cre10g0657 | 175 | PRINTS | CCAAT-binding transcription factor subunit A signature | 71 | 89 | - | - | |
Cre10g0657 | 175 | PANTHER | CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED | 13 | 124 | IPR027113 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0001228(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER)|GO:0016602(InterPro)|GO:0016602(PANTHER) | |
Cre10g0657 | 175 | FunFam | Nuclear transcription factor Y subunit B-3 | 13 | 135 | - | - | |
Cre10g0657 | 175 | ProSitePatterns | NF-YB/HAP3 subunit signature. | 55 | 71 | IPR003956 | GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cre10g0657 | 175 | MobiDBLite | consensus disorder prediction | 152 | 175 | - | - | |
Cre10g0657 | 175 | MobiDBLite | consensus disorder prediction | 1 | 24 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cre02g1703 | Cre-Chr2:30118535 | Cre10g0657 | Cre-Chr10:6228589 | 2.70E-41 | dispersed | |
Cre07g1297 | Cre-Chr7:27235767 | Cre10g0657 | Cre-Chr10:6228589 | 5.00E-42 | dispersed | |
Cre09g0581 | Cre-Chr9:5471554 | Cre10g0657 | Cre-Chr10:6228589 | 3.70E-39 | dispersed | |
Cre10g0657 | Cre-Chr10:6228589 | Cre10g0675 | Cre-Chr10:6392425 | 9.70E-33 | dispersed | |
Cre10g0657 | Cre-Chr10:6228589 | Cre10g2172 | Cre-Chr10:36251410 | 6.00E-43 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
54496 | PF00808 | CBFD_NFYB_HMF | 1.80E-27 | CL0012 | Cre | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cre10g0657 | K08065 | - | csv:101204640 | 311.997 |