Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre10g0657 ATGGCTGACTCCGACAACGATTCCGGCGGCGGCTACCAGAAATCTCCCTCTCCACGTGAGCACGACAGACTCCTTCCCATCGCCAACGTCGGCCGGATCATGAAAAAGGCTCTCCCTGGGAACGCCAAGATCTCAAAGGACGCCAAAGAAACCGTCCAAGAATGCGTCTCTGAGTTTATCAGCTTCGTCACCGGCGAAGCCTCCGACAAGTGCCACAACGAGAAGCGTAAGACGATCAACGGCGACGATTTGCTCTGGGCTATGGCGACTTTAGGGTTCGAAGACTATGTCGATCCTCTCAAGCTTTATCTCCAACGGTTTCGAGAAATTGAAGGCGAGAGGACCACGCTTGCCTCACGTGACTCCGCCTCCGCCGCCAACCCCGCCGGAGCTACGAATAGTACGTTTTTCGACGGCGGTGGGGAATTTGGGGGTGGGATGGGGATGACCATGCCTCCGAATGTTTATGGTTCTAATGGGCCGCGTTGGGATGGGCCTGGGTTTACTACTACGGGTCGGCCCAGGTAG 528 56.44 MADSDNDSGGGYQKSPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKETVQECVSEFISFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLYLQRFREIEGERTTLASRDSASAANPAGATNSTFFDGGGEFGGGMGMTMPPNVYGSNGPRWDGPGFTTTGRPR 175
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 6228589 6229116 + CrPI670011_10g006570.1 Cre10g0657 509959
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre10g0657 175 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 24 88 IPR003958 -
Cre10g0657 175 SUPERFAMILY Histone-fold 22 123 IPR009072 GO:0046982(InterPro)
Cre10g0657 175 Gene3D Histone, subunit A 11 135 IPR009072 GO:0046982(InterPro)
Cre10g0657 175 PRINTS CCAAT-binding transcription factor subunit A signature 52 70 - -
Cre10g0657 175 PRINTS CCAAT-binding transcription factor subunit A signature 90 108 - -
Cre10g0657 175 PRINTS CCAAT-binding transcription factor subunit A signature 71 89 - -
Cre10g0657 175 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 13 124 IPR027113 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0001228(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER)|GO:0016602(InterPro)|GO:0016602(PANTHER)
Cre10g0657 175 FunFam Nuclear transcription factor Y subunit B-3 13 135 - -
Cre10g0657 175 ProSitePatterns NF-YB/HAP3 subunit signature. 55 71 IPR003956 GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cre10g0657 175 MobiDBLite consensus disorder prediction 152 175 - -
Cre10g0657 175 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g1703 Cre-Chr2:30118535 Cre10g0657 Cre-Chr10:6228589 2.70E-41 dispersed
Cre07g1297 Cre-Chr7:27235767 Cre10g0657 Cre-Chr10:6228589 5.00E-42 dispersed
Cre09g0581 Cre-Chr9:5471554 Cre10g0657 Cre-Chr10:6228589 3.70E-39 dispersed
Cre10g0657 Cre-Chr10:6228589 Cre10g0675 Cre-Chr10:6392425 9.70E-33 dispersed
Cre10g0657 Cre-Chr10:6228589 Cre10g2172 Cre-Chr10:36251410 6.00E-43 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54496 PF00808 CBFD_NFYB_HMF 1.80E-27 CL0012 Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre10g0657 K08065 - csv:101204640 311.997