Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre10g0675 ATGGAATGTGGAGGAACTGCTCAAGGAGGAGGAGATGGCTTCCATAGCTATAAAAGGCAACACCCTAAACCAACTTCTGCACTGAATATGTTGCTGACCCCAAACAAGCCAACCTCCGCCAACAACACTCCGAACAGCAACCACCACCTCTCCAATGGTGGAGCCGCCACCGGCAACTCCCCAGCAACTAGCCCCGTCCCGGTGGCGACCGCAAACAATGAGCAAAGCCAACAATGCGTGGTGCGAGAGCAAGACCAATACATGCCGATTGCTAATGTGATACGCATCATGCGGCGGATCTTGCCCTCCCATGCGAAGATATCCGACGACGCCAAAGAGACTATCCAAGAATGTGTGTCGGAGTACATCAGCTTCATAACTGGCGAGGCGAACGAGCGTTGCCAACGGGAGCAGCGCAAGACGGTAACAGCGGAGGATGTCCTTTGGGCTATGGGGAAGCTAGGTTTTGACGACTACATCGAACCGCTAACCGTTTTCCTCAACCGCTATCGTGAGTCAGAGAGTGACCGAATTCGCACTGAGCCGATTTTGAGGCGCAATGTGGATTACGGGCCACAAGTGGGGATGATGCCACCGTACGGGCAGGCATTTCAAATAGGGCACGTCCCAGCGGGGATGTTCGATGCAATGGGCGGATACTATGGCGGAGGCGGGAGCGGGGGGCCAAGCGCGGGGAATGGTAGCCAGCTTTGA 714 55.46 MECGGTAQGGGDGFHSYKRQHPKPTSALNMLLTPNKPTSANNTPNSNHHLSNGGAATGNSPATSPVPVATANNEQSQQCVVREQDQYMPIANVIRIMRRILPSHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTVTAEDVLWAMGKLGFDDYIEPLTVFLNRYRESESDRIRTEPILRRNVDYGPQVGMMPPYGQAFQIGHVPAGMFDAMGGYYGGGGSGGPSAGNGSQL 237
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 6392425 6395353 + CrPI670011_10g006750.1 Cre10g0675 509977

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre10g0675 237 ProSitePatterns NF-YB/HAP3 subunit signature. 118 134 IPR003956 GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cre10g0675 237 MobiDBLite consensus disorder prediction 22 77 - -
Cre10g0675 237 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 88 151 IPR003958 -
Cre10g0675 237 FunFam Nuclear transcription factor Y subunit B-6 76 188 - -
Cre10g0675 237 Gene3D Histone, subunit A 74 188 IPR009072 GO:0046982(InterPro)
Cre10g0675 237 MobiDBLite consensus disorder prediction 1 77 - -
Cre10g0675 237 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 70 177 IPR027113 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0001228(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER)|GO:0016602(InterPro)|GO:0016602(PANTHER)
Cre10g0675 237 PRINTS CCAAT-binding transcription factor subunit A signature 134 152 - -
Cre10g0675 237 PRINTS CCAAT-binding transcription factor subunit A signature 115 133 - -
Cre10g0675 237 PRINTS CCAAT-binding transcription factor subunit A signature 153 171 - -
Cre10g0675 237 SUPERFAMILY Histone-fold 84 177 IPR009072 GO:0046982(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre10g0675 K08065 - - csv:116402762 379.022
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre10g0657 Cre-Chr10:6228589 Cre10g0675 Cre-Chr10:6392425 9.70E-33 dispersed
Cre10g0675 Cre-Chr10:6392425 Cre10g2172 Cre-Chr10:36251410 1.20E-33 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cre10g0675 . 13 177 CCAAT-HAP3 Transcription Factor Family AT5G47670 61.2 9.9e-49 190.7
Cre02g1245 . 6 117 CCAAT-HAP3 Transcription Factor Family AT5G47670 60.7 7.9e-38 154.5
Cre10g0657 . 6 127 CCAAT-HAP3 Transcription Factor Family AT5G47670 56.6 6.7e-37 151.4
Cre10g0675 . 37 199 CCAAT-HAP3 Transcription Factor Family AT1G21970 61.1 4.8e-51 198.4
Cre07g1297 . 10 138 CCAAT-HAP3 Transcription Factor Family AT1G21970 52.6 2.3e-37 152.9
Cre02g1245 . 1 128 CCAAT-HAP3 Transcription Factor Family AT4G14540 86.0 1.5e-56 216.1
Cre10g0657 . 1 151 CCAAT-HAP3 Transcription Factor Family AT4G14540 68.4 4.3e-51 198.0
Cre07g1297 . 29 135 CCAAT-HAP3 Transcription Factor Family AT4G14540 86.1 6.4e-47 184.1
Cre10g2172 . 22 115 CCAAT-HAP3 Transcription Factor Family AT4G14540 87.2 1.5e-43 172.9
Cre02g1703 . 382 500 CCAAT-HAP3 Transcription Factor Family AT4G14540 68.9 1.9e-43 172.6
Cre09g0581 . 44 139 CCAAT-HAP3 Transcription Factor Family AT4G14540 72.9 2.1e-37 152.5
Cre02g1703 . 369 485 CCAAT-HAP3 Transcription Factor Family AT2G38880 79.5 6.5e-49 190.7
Cre10g2172 . 1 115 CCAAT-HAP3 Transcription Factor Family AT2G38880 79.1 3.2e-48 188.3
Cre02g1245 . 1 113 CCAAT-HAP3 Transcription Factor Family AT2G38880 70.8 1.5e-42 169.5
Cre10g0657 . 1 110 CCAAT-HAP3 Transcription Factor Family AT2G38880 71.2 1.0e-41 166.8
Cre07g1297 . 16 122 CCAAT-HAP3 Transcription Factor Family AT2G38880 72.0 3.8e-41 164.9
Cre09g0581 . 32 135 CCAAT-HAP3 Transcription Factor Family AT2G38880 69.8 1.4e-38 156.4
Cre09g0581 . 42 139 CCAAT-HAP3 Transcription Factor Family AT2G47810 84.7 1.1e-43 173.3
Cre10g0657 . 19 114 CCAAT-HAP3 Transcription Factor Family AT2G47810 76.0 1.7e-39 159.5
Cre02g1245 . 18 117 CCAAT-HAP3 Transcription Factor Family AT2G47810 71.0 6.4e-39 157.5
Cre07g1297 . 32 140 CCAAT-HAP3 Transcription Factor Family AT2G47810 67.9 5.4e-38 154.5
Cre10g2172 . 1 167 CCAAT-HAP3 Transcription Factor Family AT2G37060 75.0 8.3e-61 230.3
Cre02g1703 . 375 534 CCAAT-HAP3 Transcription Factor Family AT2G37060 71.3 4.0e-55 211.5
Cre02g1245 . 6 116 CCAAT-HAP3 Transcription Factor Family AT2G37060 76.6 1.4e-44 176.4
Cre07g1297 . 31 136 CCAAT-HAP3 Transcription Factor Family AT2G37060 73.6 4.3e-41 164.9
Cre10g0657 . 6 113 CCAAT-HAP3 Transcription Factor Family AT2G37060 72.5 7.3e-41 164.1
Cre09g0581 . 43 145 CCAAT-HAP3 Transcription Factor Family AT2G37060 68.9 8.4e-37 150.6
Cre07g1297 . 19 133 CCAAT-HAP3 Transcription Factor Family AT2G13570 75.0 2.3e-44 176.0
Cre02g1245 . 22 123 CCAAT-HAP3 Transcription Factor Family AT2G13570 81.4 4.0e-44 175.3
Cre10g2172 . 7 120 CCAAT-HAP3 Transcription Factor Family AT2G13570 69.7 1.4e-41 166.8
Cre10g0657 . 19 114 CCAAT-HAP3 Transcription Factor Family AT2G13570 80.2 2.4e-41 166.0
Cre02g1703 . 395 489 CCAAT-HAP3 Transcription Factor Family AT2G13570 74.7 2.9e-39 159.1
Cre09g0581 . 20 144 CCAAT-HAP3 Transcription Factor Family AT2G13570 63.2 2.9e-39 159.1
Cre02g1245 . 1 132 CCAAT-HAP3 Transcription Factor Family AT5G47640 71.5 4.6e-52 201.4
Cre10g0657 . 1 117 CCAAT-HAP3 Transcription Factor Family AT5G47640 81.5 5.6e-50 194.5
Cre07g1297 . 27 132 CCAAT-HAP3 Transcription Factor Family AT5G47640 80.2 9.2e-45 177.2
Cre02g1703 . 395 505 CCAAT-HAP3 Transcription Factor Family AT5G47640 70.9 1.9e-42 169.5
Cre10g2172 . 11 124 CCAAT-HAP3 Transcription Factor Family AT5G47640 71.1 5.6e-42 167.9
Cre09g0581 . 44 140 CCAAT-HAP3 Transcription Factor Family AT5G47640 76.3 1.3e-38 156.8
Cre10g2172 . 12 166 CCAAT-HAP3 Transcription Factor Family AT3G53340 73.5 2.6e-57 218.8
Cre02g1703 . 380 533 CCAAT-HAP3 Transcription Factor Family AT3G53340 71.4 4.1e-55 211.5
Cre02g1245 . 6 125 CCAAT-HAP3 Transcription Factor Family AT3G53340 71.7 2.9e-45 178.7
Cre10g0657 . 6 113 CCAAT-HAP3 Transcription Factor Family AT3G53340 73.4 1.5e-41 166.4
Cre07g1297 . 20 124 CCAAT-HAP3 Transcription Factor Family AT3G53340 74.3 7.5e-41 164.1
Cre09g0581 . 43 145 CCAAT-HAP3 Transcription Factor Family AT3G53340 69.9 1.7e-37 152.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006157 1 1 0 1 1 1 0 1 1 1 1 1 2 1 1 3 1 2 2 1 5 1 2 1 1 1 1 1 1 0 37
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54497 PF00808 CBFD_NFYB_HMF 3.00E-25 CL0012 Cre TF