Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre10g0675 ATGGAATGTGGAGGAACTGCTCAAGGAGGAGGAGATGGCTTCCATAGCTATAAAAGGCAACACCCTAAACCAACTTCTGCACTGAATATGTTGCTGACCCCAAACAAGCCAACCTCCGCCAACAACACTCCGAACAGCAACCACCACCTCTCCAATGGTGGAGCCGCCACCGGCAACTCCCCAGCAACTAGCCCCGTCCCGGTGGCGACCGCAAACAATGAGCAAAGCCAACAATGCGTGGTGCGAGAGCAAGACCAATACATGCCGATTGCTAATGTGATACGCATCATGCGGCGGATCTTGCCCTCCCATGCGAAGATATCCGACGACGCCAAAGAGACTATCCAAGAATGTGTGTCGGAGTACATCAGCTTCATAACTGGCGAGGCGAACGAGCGTTGCCAACGGGAGCAGCGCAAGACGGTAACAGCGGAGGATGTCCTTTGGGCTATGGGGAAGCTAGGTTTTGACGACTACATCGAACCGCTAACCGTTTTCCTCAACCGCTATCGTGAGTCAGAGAGTGACCGAATTCGCACTGAGCCGATTTTGAGGCGCAATGTGGATTACGGGCCACAAGTGGGGATGATGCCACCGTACGGGCAGGCATTTCAAATAGGGCACGTCCCAGCGGGGATGTTCGATGCAATGGGCGGATACTATGGCGGAGGCGGGAGCGGGGGGCCAAGCGCGGGGAATGGTAGCCAGCTTTGA 714 55.46 MECGGTAQGGGDGFHSYKRQHPKPTSALNMLLTPNKPTSANNTPNSNHHLSNGGAATGNSPATSPVPVATANNEQSQQCVVREQDQYMPIANVIRIMRRILPSHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTVTAEDVLWAMGKLGFDDYIEPLTVFLNRYRESESDRIRTEPILRRNVDYGPQVGMMPPYGQAFQIGHVPAGMFDAMGGYYGGGGSGGPSAGNGSQL 237
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 6392425 6395353 + CrPI670011_10g006750.1 Cre10g0675 509977
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre10g0675 237 ProSitePatterns NF-YB/HAP3 subunit signature. 118 134 IPR003956 GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cre10g0675 237 MobiDBLite consensus disorder prediction 22 77 - -
Cre10g0675 237 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 88 151 IPR003958 -
Cre10g0675 237 FunFam Nuclear transcription factor Y subunit B-6 76 188 - -
Cre10g0675 237 Gene3D Histone, subunit A 74 188 IPR009072 GO:0046982(InterPro)
Cre10g0675 237 MobiDBLite consensus disorder prediction 1 77 - -
Cre10g0675 237 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 70 177 IPR027113 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0001228(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER)|GO:0016602(InterPro)|GO:0016602(PANTHER)
Cre10g0675 237 PRINTS CCAAT-binding transcription factor subunit A signature 134 152 - -
Cre10g0675 237 PRINTS CCAAT-binding transcription factor subunit A signature 115 133 - -
Cre10g0675 237 PRINTS CCAAT-binding transcription factor subunit A signature 153 171 - -
Cre10g0675 237 SUPERFAMILY Histone-fold 84 177 IPR009072 GO:0046982(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre10g0657 Cre-Chr10:6228589 Cre10g0675 Cre-Chr10:6392425 9.70E-33 dispersed
Cre10g0675 Cre-Chr10:6392425 Cre10g2172 Cre-Chr10:36251410 1.20E-33 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54497 PF00808 CBFD_NFYB_HMF 3.00E-25 CL0012 Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre10g0675 K08065 - csv:116402762 379.022