Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre10g0686 ATGCAGGAACCTTCAAGAAAGAAAGTTCCAAATCAATCTCATAGGTTCTATGAACAGCCACAGCAAGAACCTGGTTCCTGTTACTGGCCTCCTATCAACCATGGAGGTGTCTTGTATCCTGACGATGTATACGAACAAAATCACTTACCATCTGAGACTTTCAAACATTCTTGCAACCTTGAGTCGTCCTCGGGAACTAGTAGTTACCCTCCTCAAAATTCTTCCTCTACTGCTAGCTTCACATCAAATGGAAGCCCTTCTTCACACCAAGAGTGCCATTCATACCCGTTAGACCCCTATTATTCTCCCGACAATAATTGTGGCTCACCTGTAAGTAGATCTTGCTTAACAGATGCTGCTGCTGATGACTTAAGGCACAAGATCAGGGAATTGGAGACTGCAATGCTTGGACCTGATGCAGATAGGCTTGACATCTATTCTGTCACGGAACCAGTTAATCCTGTATTACCTGTGCAAGAAATGGGGTGGAATGACGTGGCTGAGATAATCTCTAGAAGAGATTTGAAAGAGATGCTTTGTGCTTGTGCTCGAGCAATAGAAGAAAACGATATGATGACTGGAGAATGGTTGGTGTCAGAGTTACGTGGAATGGTCTCGGTTTCTGGTGAGCCGATTCAGCGTTTAGGGGCTTACTTGTTAGAGGCACTTGTTGCAAGGACAGCATCTTCAGGTAGTTCTATCTACAAAGCCCTAAGATGTAAAGAGCCTATAGGTGCTGAATTGCTCTCATACATGCATGTTCTCTACGACATTTGCCCTTATTTCAAGTTTGGGTACCTTTCAGCAAATGGGGCAATTGCTGAAGCCATAAAAGGTGAAAATAGAGTTCACATAATTGATTTTCAGATAGCTCAGGGAAATCAGTGGATCACATTGATGCAAGCTCTGGCCAATCGGCCTGGAGGGCCCCCAAAGGTTACTATTACAGGCATAGACGATTCGACTTCAGCTTTTGCTCGAGGAGGGGGGCTCGAGATTGTAGGAAAAAGGTTGACGATTTTGGCAGAGTCATTAAATGTGCCCTTTGAGTTCCATGGCATTGCAGGCTCTGCTTCTGAAATTCAACGTGAAGATCTAAAAGTTCAACCAGGTGAAGCGATTGCTGTGAGTTTTGCCTTGGTGCTGCACCATATGCCAGATGAAAGTGTTGGTAGTCAGAATCACCGGGACCGAATTTTGCGGCTGGTCAAGAGTTTGTCTCCAAAAGTCGTGACGGTGGTCGAGCACGAGTCAAACAACAATACAGCTCCCTTTTTTCCCCGTTTCCTCCAGACATTGAAGTATTATACTGCTGTTTTCGAGTCCATAGATGTGACCCTCCCGAGAGATCACAAGGAGCGGATCAACGTGGAGCAGCACTGTTTAGCTCGGGACATCGTAAATTTAGTAGCATGTGAGGGACCCGAAAGAGTCGAACGCCATGAACTTTTCGGAAAGTGGAGATCACGGCTACTCATGGCTGGGTTTAAGCCACATCCTTTAAGCCCTTTTGTGAATGCTACTATTGAGGCACTGCTAAAGAACTACTGTGACAAGTACACACTTGAAGAAAGGGATGGAGTTTTATATCTTGGTTGGTTGAATCAAAATTTGGTTACCTCTAGTGCTTGGATTTGA 1638 44.87 MQEPSRKKVPNQSHRFYEQPQQEPGSCYWPPINHGGVLYPDDVYEQNHLPSETFKHSCNLESSSGTSSYPPQNSSSTASFTSNGSPSSHQECHSYPLDPYYSPDNNCGSPVSRSCLTDAAADDLRHKIRELETAMLGPDADRLDIYSVTEPVNPVLPVQEMGWNDVAEIISRRDLKEMLCACARAIEENDMMTGEWLVSELRGMVSVSGEPIQRLGAYLLEALVARTASSGSSIYKALRCKEPIGAELLSYMHVLYDICPYFKFGYLSANGAIAEAIKGENRVHIIDFQIAQGNQWITLMQALANRPGGPPKVTITGIDDSTSAFARGGGLEIVGKRLTILAESLNVPFEFHGIAGSASEIQREDLKVQPGEAIAVSFALVLHHMPDESVGSQNHRDRILRLVKSLSPKVVTVVEHESNNNTAPFFPRFLQTLKYYTAVFESIDVTLPRDHKERINVEQHCLARDIVNLVACEGPERVERHELFGKWRSRLLMAGFKPHPLSPFVNATIEALLKNYCDKYTLEERDGVLYLGWLNQNLVTSSAWI 545
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 6513436 6515073 + CrPI670011_10g006860.1 Cre10g0686 509988
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre10g0686 545 ProSiteProfiles GRAS family profile. 166 545 IPR005202 -
Cre10g0686 545 MobiDBLite consensus disorder prediction 1 31 - -
Cre10g0686 545 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 127 544 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
Cre10g0686 545 Pfam GRAS domain family 175 544 IPR005202 -
Cre10g0686 545 MobiDBLite consensus disorder prediction 55 91 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g1271 Cre-Chr2:13970041 Cre10g0686 Cre-Chr10:6513436 5.60E-171 dispersed
Cre03g0450 Cre-Chr3:2911442 Cre10g0686 Cre-Chr10:6513436 3.80E-56 dispersed
Cre04g1759 Cre-Chr4:35605072 Cre10g0686 Cre-Chr10:6513436 4.70E-150 dispersed
Cre05g1656 Cre-Chr5:27522011 Cre10g0686 Cre-Chr10:6513436 4.20E-78 dispersed
Cre09g0930 Cre-Chr9:9445925 Cre10g0686 Cre-Chr10:6513436 1.20E-113 dispersed
Cre09g2409 Cre-Chr9:43483821 Cre10g0686 Cre-Chr10:6513436 3.60E-63 dispersed
Cre10g0686 Cre-Chr10:6513436 Cre11g1204 Cre-Chr11:9983798 5.60E-71 dispersed
Cre10g0686 Cre-Chr10:6513436 Cre10g2227 Cre-Chr10:36712493 1.90E-58 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54498 PF03514 GRAS 4.20E-130 CL0063 Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre10g0686 K27748 - csv:101220072 1010.36