Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cre10g0687 | ATGGACCCCACTGACTCCGACCTCGCCGATCCATCTCATGCCTCCTCCTCCGCTGGCGCTAAGTACAAGCTCATGTCTCCGGCCAAGCTTCCGATCTCTAGGTCCCCTTGCATTACCATCCCTCCTGGCCTCAGCCCCACTTCCTTTCTCGACTCTCCTGTTCTGCTTACCAACTTGAAGGTAGAGCCTTCTCCGACTACTGGGTCCTTTACCAAGCTTCCGATGGCACATGACTCTTCTAGCTCAGCTATTTATCCAGTGACCACCATGGCTTTCTCAAATACTAATGCCTCAGATGAAGGAAGATCCAACTACTTCGAGTTCAAACCATATGTTGGACCAAATATGGTTCCTGCAGATTTGAGTCATAGGAAAGGTGAACAATCTTCTGAAGTTCAAGTTCAAGGTCAACCTCAACCATTTACTGCTCCACCCATGACTAAAATTGAGATCAATGTTGTTTCAAATGATTTGAGCCGATCAACCCAGATGGATACACATCCAGTTGGCTCAGGGGCTAGTGCTCCTGAAGCCGATGGAGATGATATCAACCATAGTTTGAACACAAATAGCAGGGTTCAGGCTCCACAATCTGATCCAAAAGGCAGTGGCATTCCAGTGGTTTCAGATAGGTTGTCTGATGATGGATATAACTGGCGGAAGTATGGACAGAAGCATGTCAAAGGGAGTGAATTTCCTCGTAGCTATTATAAATGTACCCATCCTAACTGTGAAGTGAAAAAGCTCTTTGAACGCTCCCATGATGGGCAAATAGCTGATATTATCTATAAGGGTACCCACGATCATCCTAAGCCTCAGCCAAGCCGGCGATATTCTGCCAGTGCTTCTGTGAATGTTCAAGAAGATGGGCCTGATAAGCCTTCACCTTTAACTGGCCAAGATGACAGATTGTTCACCATGTATGCTCAGACAGTTCATACCCTTGAGCCAAATGGAACTACAGAACCATCACTGGCCGCAAATGATAGCATCAACGAAGGTGCAGGAACAACTCTGCCATGCAAGAATCAGGATGAGGTTGATGACGATGACATATTCTCGAAGCGGAGGAAAATGGAACTTGGTGGGTTCGATGTCTGCCCAATGGTTAAACCAATCAGGGAACCACGTGTTGTGGTTCAAACTCTAAGTGAGGTAGATATACTGGATGACGGGTATCGCTGGCGCAAATATGGCCAGAAGGTAGTGAGAGGAAATCCCAACCCAAGGAGTTATTACAAATGCACAAATGTTGGATGCCCTGTTAGAAAACATGTCGAAAGAGCATCCCATGACCCAAAAGCTGTTATAACTACGTATGAGGGGAAACATAATCACGATGTTCCCACTGCAAAAACTAGTAGCCACGATGTCGGGGGTCCATCGACAATTGCACCATCGAGGTATAGACTCGAGGAGAGTGACACCATAAGCCTTGATCTTGGCGTTGGCATTGGCACGGGTGGTGAGAATAGATCAAATGATTACAGGCAGGCATTGCATTCACAACTTGTTGAAAACCAAACTCCAAATGGCAATTTCAACTTTGAAGTAGTTCAAGAGAACTCGGCCCCAACCTATTTCGGTGTAATCAATAGAGGTATACATCAACATGGATCGAGAGAGAGTTTGAGTGAAAGCCACAATAGGGAGATTGCTCCGCTAAACCATTCGTCTCACCCATATCCGACAAGCATTGGGAGAATACTAACAGGGCCTTAA | 1722 | 46.17 | MDPTDSDLADPSHASSSAGAKYKLMSPAKLPISRSPCITIPPGLSPTSFLDSPVLLTNLKVEPSPTTGSFTKLPMAHDSSSSAIYPVTTMAFSNTNASDEGRSNYFEFKPYVGPNMVPADLSHRKGEQSSEVQVQGQPQPFTAPPMTKIEINVVSNDLSRSTQMDTHPVGSGASAPEADGDDINHSLNTNSRVQAPQSDPKGSGIPVVSDRLSDDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSHDGQIADIIYKGTHDHPKPQPSRRYSASASVNVQEDGPDKPSPLTGQDDRLFTMYAQTVHTLEPNGTTEPSLAANDSINEGAGTTLPCKNQDEVDDDDIFSKRRKMELGGFDVCPMVKPIREPRVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNPRSYYKCTNVGCPVRKHVERASHDPKAVITTYEGKHNHDVPTAKTSSHDVGGPSTIAPSRYRLEESDTISLDLGVGIGTGGENRSNDYRQALHSQLVENQTPNGNFNFEVVQENSAPTYFGVINRGIHQHGSRESLSESHNREIAPLNHSSHPYPTSIGRILTGP | 573 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 10 | 6515505 | 6521188 | - | CrPI670011_10g006870.1 | Cre10g0687 | 509989 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cre10g0687 | 573 | MobiDBLite | consensus disorder prediction | 128 | 142 | - | - | |
| Cre10g0687 | 573 | Gene3D | WRKY domain | 207 | 273 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Cre10g0687 | 573 | FunFam | WRKY transcription factor | 204 | 273 | - | - | |
| Cre10g0687 | 573 | MobiDBLite | consensus disorder prediction | 553 | 573 | - | - | |
| Cre10g0687 | 573 | MobiDBLite | consensus disorder prediction | 122 | 144 | - | - | |
| Cre10g0687 | 573 | ProSiteProfiles | WRKY domain profile. | 384 | 449 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Cre10g0687 | 573 | MobiDBLite | consensus disorder prediction | 161 | 209 | - | - | |
| Cre10g0687 | 573 | SUPERFAMILY | WRKY DNA-binding domain | 381 | 449 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Cre10g0687 | 573 | MobiDBLite | consensus disorder prediction | 183 | 198 | - | - | |
| Cre10g0687 | 573 | MobiDBLite | consensus disorder prediction | 264 | 301 | - | - | |
| Cre10g0687 | 573 | FunFam | WRKY transcription factor 33 | 376 | 442 | - | - | |
| Cre10g0687 | 573 | ProSiteProfiles | WRKY domain profile. | 208 | 272 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Cre10g0687 | 573 | MobiDBLite | consensus disorder prediction | 1 | 20 | - | - | |
| Cre10g0687 | 573 | Gene3D | WRKY domain | 376 | 442 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Cre10g0687 | 573 | SUPERFAMILY | WRKY DNA-binding domain | 210 | 272 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Cre10g0687 | 573 | Pfam | WRKY DNA -binding domain | 214 | 270 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Cre10g0687 | 573 | Pfam | WRKY DNA -binding domain | 390 | 447 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Cre10g0687 | 573 | MobiDBLite | consensus disorder prediction | 445 | 468 | - | - | |
| Cre10g0687 | 573 | SMART | WRKY_cls | 389 | 448 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Cre10g0687 | 573 | SMART | WRKY_cls | 213 | 271 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Cre10g0687 | 573 | PANTHER | WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED | 98 | 457 | IPR044810 | GO:0003700(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cre10g0687 | Cre-Chr10:6515505 | Cre11g0945 | Cre-Chr11:6767412 | 5.30E-72 | dispersed | |
| Cre03g1334 | Cre-Chr3:23710873 | Cre10g0687 | Cre-Chr10:6515505 | 1.90E-77 | transposed | |
| Cre10g0629 | Cre-Chr10:5852646 | Cre10g0687 | Cre-Chr10:6515505 | 2.00E-82 | transposed | |
| Cre10g0687 | Cre-Chr10:6515505 | Cre02g0607 | Cre-Chr2:3052017 | 6.50E-70 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 54499 | PF03106 | WRKY | 3.30E-25 | CL0274 | Cre | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cre10g0687 | - | - | - | 0.0 |