Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre10g0688 ATGATGCCTAGTATGATGACAGAGTCATCAGAGAAGGAGACAGAGGCATTTGTAGAGGTGGATCCGACGGGTCGATATGGGCGGTACGGGGAGCTTCTGGGGACAGGGGCGGTGAAGAAAGTGTACAGAGCATTTGATCAAGAAGAAGGAATAGAGGTAGCTTGGAACCAAGTGAAACTAAGGAGTTTTTCAAATGATCCATCCATGATAGATAGGTTGTATTCAGAGGTGAGATTGTTAAGAACCTTAAAGAACAACAACATAATTGCCTTGTATGATGTTTGGCTTGACAAACTTCATGGAACCTTAAATTTCATTACTGAGGTTTGTACAAGTGGAAACCTTAGAGAGTACAGGAAGAAGCATAGGCAAGTCTCTTTGAAAGCTTTGAAGAAATGGTCCAAACAAATTCTTAAGGGTTTGCATTATTTGCATACTCATGACCCTTGTGTTATTCATAGAGATCTCAACTGTAGCAACCTCTTTGTCAATGGCAATGTTGGCCAGGTAAAGATTGGTGACTTGGGTTTAGCAGCAACCGTGAGAAAGAATCACTCAGCTCATTCAGTGCTTGGGACACCAGAATTCATGGCACCTGAGCTATATGAAGAGCATTACACCGAGCTTGTGGACATATATTCATTTGGAATGTGTTTGCTTGAATTAGTCACTTTGGAAATTCCCTATAGTGAATGTGACAATGTTGCCAAAATCTATAAAAAAGTCTCCTCAGGCATCAAGCCTCAAGCCCTTGACAAGGTCAAGGACCCTGAAGTCAAGGCTTTCATCGAGAATTGCCTTGCCGAATCCCGAGCTCGACCCTCAGCTGCTGACCTCCTCCGCCACCCCTTCTTCGGAGAAATTGATGATGACGAAAACGACGACAACAATGATCATTAA 900 43.0 MMPSMMTESSEKETEAFVEVDPTGRYGRYGELLGTGAVKKVYRAFDQEEGIEVAWNQVKLRSFSNDPSMIDRLYSEVRLLRTLKNNNIIALYDVWLDKLHGTLNFITEVCTSGNLREYRKKHRQVSLKALKKWSKQILKGLHYLHTHDPCVIHRDLNCSNLFVNGNVGQVKIGDLGLAATVRKNHSAHSVLGTPEFMAPELYEEHYTELVDIYSFGMCLLELVTLEIPYSECDNVAKIYKKVSSGIKPQALDKVKDPEVKAFIENCLAESRARPSAADLLRHPFFGEIDDDENDDNNDH 299
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 6547289 6549630 + CrPI670011_10g006880.1 Cre10g0688 509990
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre10g0688 299 FunFam Probable serine/threonine-protein kinase WNK1 11 108 - -
Cre10g0688 299 SUPERFAMILY Protein kinase-like (PK-like) 29 290 IPR011009 -
Cre10g0688 299 CDD STKc_WNK 25 285 - -
Cre10g0688 299 Gene3D Phosphorylase Kinase; domain 1 10 108 - -
Cre10g0688 299 FunFam probable serine/threonine-protein kinase WNK9 110 291 - -
Cre10g0688 299 Gene3D Transferase(Phosphotransferase) domain 1 110 290 - -
Cre10g0688 299 ProSiteProfiles Protein kinase domain profile. 27 285 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre10g0688 299 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 9 286 IPR050588 GO:0004674(PANTHER)|GO:0005737(PANTHER)|GO:0006468(PANTHER)|GO:0035556(PANTHER)
Cre10g0688 299 PIRSF TyrPK_CSF1-R 26 129 - -
Cre10g0688 299 PIRSF TyrPK_CSF1-R 119 282 - -
Cre10g0688 299 Pfam Protein kinase domain 30 285 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre09g2350 Cre-Chr9:42767772 Cre10g0688 Cre-Chr10:6547289 1.10E-97 dispersed
Cre10g0688 Cre-Chr10:6547289 Cre05g1949 Cre-Chr5:31636477 4.10E-23 dispersed
Cre10g0688 Cre-Chr10:6547289 Cre02g1958 Cre-Chr2:32971515 2.90E-101 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64450 PF00069 Pkinase 2.10E-51 CL0016 Cre PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre10g0688 K08867 - csv:101221172 553.903