Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cre10g0700 | ATGATGGCGACGAGTGCTGGTGACGATGGCGGTGATATTGCGATGACGGCGACAGTGAGGGCTGGAGATGATGGCGGCGAGTACTGCGATGACGGCGACACGACTGAGGTTGCTCCGAAACCTCACACCGGACTCCCTCTTCACCTCAGCTGCGCAATGGCTGTTGAGACTTTTGGAAAAGCTCCAATGTTTGATGACGACGATGATGAGGACAACATGCCGATAGTTTTTAAAAGGAGTAGTGCATCTAGGCAAAATCAGTTAGATTCGGAAATTAAGCATTCACAATCTCAGAGGTTGAATAAGTTATCAGGGAGACCGGGTTCTGATGTATGTTCATCCAATGGCCAAAGCTCTAATAATCAAAAAAGGATGACTCCATTGCCAAAGACATCGCCCATGAGATCCGAAATAGGAAGTCCGAAAGCATCCAAGTCCTCAATCCAGGAACCACTTGTTAAACCACTAGGCACAACTTTAAAAGTTTCAGATTCTATGGGTAGCCGGCCGAAACATTTGGTAAACGCTGCTGTGAAAGAGGAGAATGTTACTATAAATCCTACTGACGACAATAGTGATTCAGAAGATGATAAACCATTGAGTATTAGATTGAAAGGGAACTCCAATCAGCCCAATAAAGGGCCTGTACCAACAGTACCAAAGAATAAAGTAAAAAAACCATCAGGAGATTCTGATGATGAAATTCCTTTGTCATCAAAATTTCAAATGAAGTCTGCTTCAGGGGCTTTGGGTGGTAAACAACACGGTTTTGACGAGAAGAAACCATTGGTTCCGAAAGTTCATCAGAATGGTTCGACCTCAAGGGATAAACTGCAAAAGCCTGCTGTTCTTTCCAGCAAGAGACCTCTTCCTAGTGCAGATTCCCATTCCTCTTCTCAATTTTCAATGAAAAAGCCAAAGCTTTCAGACTCATCTACTCCTTTGAGTAGCAAGCCAGTATCATTGAAGGCAAAACAAGAAGTAGACGATGACGACGATATTCCTATTTCACAGAGAATGAAAAAGATATCTGCACCAGTGAATAAGTCATCAAGTTCTAAGCAAACAGTATCAAAAGTTGTTTCTTCTTCAATCAAGAAAACATTCAAGAAGTCCAAAAAGCCAGTCAAGAAATCTAAATATGTTAAGTCCACAAAGTTGCTGCCCAGTGCCGGTGATGGACAGAAAAAATGGACCACCTTGGTTCACAATGGTGTCATTTTCCCACCTCCATACCAGACTCATGGGGTGAAGATACTTTACAAAGGGAAGCCTGTTGATTTGACTCCGGAACAAGAGGAGGTTGCAACCATGTTTGCTGTGATGAAGGATACAGATTATATGCTAAAACCAAAATTCAAAGAAAATTTCTGGAATGACTGGCGCAAATTACTTGGGAAAAACCATGTCATTCAAAATTTGGATGATTGTGATTTTACCCCAATATATGACTGGTATCAGACCGAAAAGGAGAAGAAGAAACAGATGACTACAGAAGAGAAGAAAGCTTTGAAGGAAGAGAAACTGAAACAAGAGGAGAAGTACATGTGGGCTATTCTTGATGGGGTTAAGGAGAAGGTTGGAAACTTCAGAGTTGAACCGCCCGGATTGTTCCGAGGCCGTGGAGAACATCCAAAGATGGGGAAATTGAAAAGGCGCATTCGACCCAGCGACATCACAATTAATATTGGAAAAGGTGCTCCGATCCCTGAGTGTCCTATACCTGGTGAAAGTTGGAAGGAAGTGAGACATGACAATACAGTCACATGGTTGGCTTTCTGGAATGATCCAATAAATCAAAAAGAATTCAAATATGTGTTTCTGGCTGCTAGTAGTTCTCTGAAAGGTCAGAGTGACAAAGAGAAATACGAGAAAGCAAGGATGCTCAAGGACTACATAAAAAACATAAGGAATGCATATACAAAGGATTTTACGAGCAAAGACCCCACACGAAGGCAAATTGCAGTTGCTACTTATCTCATTGATAAACTGGCTCTTAGGGCTGGAAATGAGAAAGATGACGATGAAGCTGATACAGTTGGCTGCTGTACACTGAAAGTAGAGAACGTTAAAGCAGTACCTCCGAATCTTCTGGAGTTCAACTTCCTCGGTAAAGATTCAATCAAGTATGAAAATACTGTTGAGGTTGAGCTCCCTGTTTTCAAAGCAATCACACAATTTCAAAGTGGAAAAAGTGGAACCGATGATCTTTTTGACAAGCTGGATACGAATAAATTGAATGCTCATCTGAAGGATCTCATGCCTGGTCTCACTGCAAAAGTGTTTCGTACATATAATGCTTCTATCACACTTGATGACATGTTGAATAGAGGAACCAAAGATGGAGACGTTGCAGAAAAGATCGTCACATACCAGCACGCAAACAAGGAGGTTGCAATTATTTGTAATCACCAGCGGACTGTTTCAAAATCGCATGGGGCGCAAATGACGAGATTGAATGAGAAGATCTCTGAGCTCAGGGACATTATGAAAGAGCTGAAAATTGATTTAGATAGAGCAAAGAAAGGGAAGCCCCCTTTAAAAGATGCTGATGGAAAGCGAAAGAGGAATTTGACCCCTGAAGCGTTAGAGAAGAAAATATCCCAAACGAATGCAAAGATTGAGAAGATAGAGCGAGATATGAAGACTAAAGAGGATTTGAAAACTGTAGCGTTGGGCACGTCAAAGATCAACTACCTTGATCCTCGAATCACAGTCGCGTGGTGTAAGCGTCATGAAGTCCCTATTGAAAAGATATTCAACAAGTCTCTTCTAGCAAAGTTTGCTTGGGCAATGGACATTTTCCACCTTGTTTTCCTTCCCCTTTCGTTTTGCGAACGACGAAGGGAATTTGACTCCCTCTCCGGCCGTGGTCAATACGACGTTGATCCAATTCAACTCAAATTGGACTTCAATTCCTCCTCCCATAGGTTGATGATGGCACCTTCTGATATATGGATAAAGGAATATAATGAAGCCTCTAAGCTTGGTGATGATATCAATGGCATGATTTCTGAAAGGAGTTCCTTTCCTGCAACTGGACCAGATTCCCAACGTCATGCCTCTGCCATTCGGAGGAAGATCACAATTTTGGGGACTAAAGTTGATGGCTTAGAGTCCCTTTTGTTGAAGCTTCCTGCAAAGCAGCCCCTGTCTGAAAAGGAGATAAATCGACGTAAAGACATGCTTGCTCAGATGAGATCAAAAGTAAAGCAGATGGCCTCAACGTTGAACATGTCAAACTTTGCTAACCGAGACAGTTTGCTTGGCCCAGATATGAAATCGGCGGATGTAATGAGCAAGACTGCTGGACTAGACAATCAAGGACTTGTTGGTTTTCAAAGACAAATCATGAAAGAGCAAGATGAAGGTCTTGAAAAGCTGGAGGAGACTATTATAAGTACAAAACATATTGCTTTAGCAGTTAATGAAGAACTCGATCTTCACACTCGCCTAATTGATGACTTGGACCAACATGTTGATGTTACAGACTCTCGATTAGCGAGGGTGCAGAAGAGATTGGCAATATTGAACAAGCGAGCAAAGGGGAGCTGCTCTTGCTTTGGGATGCTTCTGTCTGTGGTTGGTATTGTGGGAATGAGAATGGAAGACCATGAGACCCACCTGATTACGTTGGTAAGTGTATTTTTACAAAATTGCCATTTCTCTGTCCTCTGGTCCTTGTCCTTGGGTACTATTCTATTCTCCTTCACCATCGCACAGTCTGTGCTCAAGGTATCTCCAGTGATGACTCTAACGGCGTTCAACGGACCCAACCGGCCAGCCTCTGAGCCGGAGAACGACCGGCCGGTGCCGTCTGCCGTTGCTGCTGACCTTCTCCTTCTAGGACTCAGCCTCAGATATGAGTCGATTGAAATCGTTGCGGAGAGCATTGGGATTTCCAACCTTTCCCCTGAGGTTGCTCTTGCTCTCACTCCCGATGTCGAGTACCGGGTCCGTGAAATCATGCAGGAGGCAGTTAAATGCATGCGTCATTCAAAGCGAACTGTTCTCACTTCCATTGATGTGGATAATGCACTTAAATTAAGAAACTTAGAGCCAATATATGGCTTTGCTGCATGCGATAGTTTGCGGTTCAAAAGAGCTGTTGGACACAAGGACCTCTTTTACATTGATGACAAGGATGTGGAGTTAAATAATGTTATTGAGTCACCTTTAGCAAAAGCAACGGTTGATACTTCAGTTGTTGCTCACTGGCTGGCAGTTGAAGGTGTTCAGCCTGCAGTTGCAGAGAACTTGCTGACTGAAGAACCCCATGATGGAAAGAAATCCGACTTGAAGGAGGAAGAACTTCTTTATGACTCCAAAGCACCTACTAAGCATGTGATTTCAAGGGATCTTCAGCTTTACTTTGAGAAAATAACTGGTCTGGTCTTGAACAAGTCTGGGTCAAATCTCTTCAGAGAAGCTTTAAGGAGCTTGTCAGTTGACTCAGGAATTCAACCTTTGCTTCCATACTTCACATGCTTCATTGCTGATGAGGTTTCAAAAAATCTATGTAATTCTCAACTCTTGATTGCTTTGATGAGGATGGTCTGGTGCCTTCTCCGAAATCCACAGATACATATGGCACCTTATTTACACCAATTGATGCCATCCATCATTACCTGCCTTGTTGCCAAACAATTAGGTAAAAGATTATCTGACAATCATTGGGAGCTTAGAGACTTAGCGGCAAGCCTGGTTTCTTTGATATGCAAAAGATTTGGACATACTTATCACAATATTCAACCTCGTGTTACAAAGACTCTTCTCCATGTTTTCTTGGACCCCTCAAAATTATTGCCTCAGCATTATGGTGCAGTTCAGGGGCTAGCAGATCTTGGTCCCGATGTGGTCCGCCAGCTTATACTACCAAATCTTGAACCGTATATGCAATATCTAGAGATGGAGAAGCAAAAGAATGAAACTAGGAGACATGAAGCTTGGCAAGTTTACAGGACCTTACTGCATGCAGCTGGTAAATGTATGCATGGTTGGCTGAAGGTTTTCCCTCTCTCTCTATACCCACCAATGTGTAGTACTTCGAAGATAAATGCGAAGATCAATGGGAAAGTCGCGAAGACAATTTCAAATAAACGCAAAGCCAGTGCAGACAACTCCGTGCAGCAACCAGCACTCAAAAAGATGGCAATGGATAGTGCATTGGGTGCAATCCCGATGAACTCCATGATGGTCGATATGCAAGGGGCTGCATCTGGGCTCCCCACACAGCTCGGAGGTTCAAACATCGGCGTCGCTCGAAATTTTCCAAATGAAATGAGGGTAGGGAGGGACGGTGAACTAGGCTTTAAGGGTTCTACTGCTCTTTCTATAGCATGGAAAGAGGATTTGGATGCTGGGTCATTGCTGACTTCGCTTTTTCCACTTTTTGGGGAAGATCTGTTTCCCTTCATCCCAAAACCCGAGCTATCCTTCTTTCTGTGA | 5448 | 43.12 | MMATSAGDDGGDIAMTATVRAGDDGGEYCDDGDTTEVAPKPHTGLPLHLSCAMAVETFGKAPMFDDDDDEDNMPIVFKRSSASRQNQLDSEIKHSQSQRLNKLSGRPGSDVCSSNGQSSNNQKRMTPLPKTSPMRSEIGSPKASKSSIQEPLVKPLGTTLKVSDSMGSRPKHLVNAAVKEENVTINPTDDNSDSEDDKPLSIRLKGNSNQPNKGPVPTVPKNKVKKPSGDSDDEIPLSSKFQMKSASGALGGKQHGFDEKKPLVPKVHQNGSTSRDKLQKPAVLSSKRPLPSADSHSSSQFSMKKPKLSDSSTPLSSKPVSLKAKQEVDDDDDIPISQRMKKISAPVNKSSSSKQTVSKVVSSSIKKTFKKSKKPVKKSKYVKSTKLLPSAGDGQKKWTTLVHNGVIFPPPYQTHGVKILYKGKPVDLTPEQEEVATMFAVMKDTDYMLKPKFKENFWNDWRKLLGKNHVIQNLDDCDFTPIYDWYQTEKEKKKQMTTEEKKALKEEKLKQEEKYMWAILDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKRRIRPSDITINIGKGAPIPECPIPGESWKEVRHDNTVTWLAFWNDPINQKEFKYVFLAASSSLKGQSDKEKYEKARMLKDYIKNIRNAYTKDFTSKDPTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVENVKAVPPNLLEFNFLGKDSIKYENTVEVELPVFKAITQFQSGKSGTDDLFDKLDTNKLNAHLKDLMPGLTAKVFRTYNASITLDDMLNRGTKDGDVAEKIVTYQHANKEVAIICNHQRTVSKSHGAQMTRLNEKISELRDIMKELKIDLDRAKKGKPPLKDADGKRKRNLTPEALEKKISQTNAKIEKIERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFAWAMDIFHLVFLPLSFCERRREFDSLSGRGQYDVDPIQLKLDFNSSSHRLMMAPSDIWIKEYNEASKLGDDINGMISERSSFPATGPDSQRHASAIRRKITILGTKVDGLESLLLKLPAKQPLSEKEINRRKDMLAQMRSKVKQMASTLNMSNFANRDSLLGPDMKSADVMSKTAGLDNQGLVGFQRQIMKEQDEGLEKLEETIISTKHIALAVNEELDLHTRLIDDLDQHVDVTDSRLARVQKRLAILNKRAKGSCSCFGMLLSVVGIVGMRMEDHETHLITLVSVFLQNCHFSVLWSLSLGTILFSFTIAQSVLKVSPVMTLTAFNGPNRPASEPENDRPVPSAVAADLLLLGLSLRYESIEIVAESIGISNLSPEVALALTPDVEYRVREIMQEAVKCMRHSKRTVLTSIDVDNALKLRNLEPIYGFAACDSLRFKRAVGHKDLFYIDDKDVELNNVIESPLAKATVDTSVVAHWLAVEGVQPAVAENLLTEEPHDGKKSDLKEEELLYDSKAPTKHVISRDLQLYFEKITGLVLNKSGSNLFREALRSLSVDSGIQPLLPYFTCFIADEVSKNLCNSQLLIALMRMVWCLLRNPQIHMAPYLHQLMPSIITCLVAKQLGKRLSDNHWELRDLAASLVSLICKRFGHTYHNIQPRVTKTLLHVFLDPSKLLPQHYGAVQGLADLGPDVVRQLILPNLEPYMQYLEMEKQKNETRRHEAWQVYRTLLHAAGKCMHGWLKVFPLSLYPPMCSTSKINAKINGKVAKTISNKRKASADNSVQQPALKKMAMDSALGAIPMNSMMVDMQGAASGLPTQLGGSNIGVARNFPNEMRVGRDGELGFKGSTALSIAWKEDLDAGSLLTSLFPLFGEDLFPFIPKPELSFFL | 1815 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 10 | 6707462 | 6730335 | + | CrPI670011_10g007000.1 | Cre10g0700 | 510002 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cre10g0700 | 1815 | SUPERFAMILY | Eukaryotic DNA topoisomerase I, N-terminal DNA-binding fragment | 392 | 609 | IPR036202 | GO:0003677(InterPro)|GO:0003917(InterPro)|GO:0005694(InterPro)|GO:0006265(InterPro) | |
| Cre10g0700 | 1815 | CDD | TAF6C | 1447 | 1659 | IPR011442 | GO:0006367(InterPro) | |
| Cre10g0700 | 1815 | Gene3D | Topoisomerase I; Chain A, domain 3 | 611 | 759 | IPR014711 | GO:0003677(InterPro)|GO:0003917(InterPro)|GO:0006265(InterPro) | |
| Cre10g0700 | 1815 | SUPERFAMILY | ARM repeat | 1455 | 1697 | IPR016024 | - | |
| Cre10g0700 | 1815 | Coils | Coil | 867 | 887 | - | - | |
| Cre10g0700 | 1815 | MobiDBLite | consensus disorder prediction | 290 | 320 | - | - | |
| Cre10g0700 | 1815 | MobiDBLite | consensus disorder prediction | 137 | 153 | - | - | |
| Cre10g0700 | 1815 | Pfam | Eukaryotic DNA topoisomerase I, DNA binding fragment | 396 | 608 | IPR008336 | GO:0003677(InterPro)|GO:0003917(InterPro)|GO:0006265(InterPro) | |
| Cre10g0700 | 1815 | Gene3D | - | 1446 | 1647 | IPR046344 | GO:0006367(InterPro) | |
| Cre10g0700 | 1815 | PRINTS | Eukaryotic DNA topoisomerase I signature | 756 | 770 | IPR001631 | GO:0003677(InterPro)|GO:0003917(InterPro)|GO:0006265(InterPro) | |
| Cre10g0700 | 1815 | PRINTS | Eukaryotic DNA topoisomerase I signature | 698 | 714 | IPR001631 | GO:0003677(InterPro)|GO:0003917(InterPro)|GO:0006265(InterPro) | |
| Cre10g0700 | 1815 | PRINTS | Eukaryotic DNA topoisomerase I signature | 676 | 690 | IPR001631 | GO:0003677(InterPro)|GO:0003917(InterPro)|GO:0006265(InterPro) | |
| Cre10g0700 | 1815 | PRINTS | Eukaryotic DNA topoisomerase I signature | 537 | 546 | IPR001631 | GO:0003677(InterPro)|GO:0003917(InterPro)|GO:0006265(InterPro) | |
| Cre10g0700 | 1815 | PRINTS | Eukaryotic DNA topoisomerase I signature | 653 | 672 | IPR001631 | GO:0003677(InterPro)|GO:0003917(InterPro)|GO:0006265(InterPro) | |
| Cre10g0700 | 1815 | PRINTS | Eukaryotic DNA topoisomerase I signature | 893 | 904 | IPR001631 | GO:0003677(InterPro)|GO:0003917(InterPro)|GO:0006265(InterPro) | |
| Cre10g0700 | 1815 | FunFam | DNA topoisomerase I | 760 | 939 | - | - | |
| Cre10g0700 | 1815 | ProSitePatterns | Eukaryotic DNA topoisomerase I active site. | 886 | 904 | IPR018521 | GO:0003677(InterPro)|GO:0003917(InterPro)|GO:0006265(InterPro) | |
| Cre10g0700 | 1815 | Gene3D | Histone, subunit A | 1281 | 1349 | IPR009072 | GO:0046982(InterPro) | |
| Cre10g0700 | 1815 | Pfam | SNARE domain | 1152 | 1200 | IPR000727 | - | |
| Cre10g0700 | 1815 | Pfam | TATA box binding protein associated factor (TAF) | 1288 | 1348 | IPR004823 | - | |
| Cre10g0700 | 1815 | CDD | SNARE_Qc | 1118 | 1175 | - | - | |
| Cre10g0700 | 1815 | FunFam | DNA topoisomerase I | 485 | 608 | - | - | |
| Cre10g0700 | 1815 | FunFam | Transcription initiation factor TFIID subunit 6 | 1447 | 1642 | - | - | |
| Cre10g0700 | 1815 | FunFam | syntaxin-51 isoform X2 | 1117 | 1179 | - | - | |
| Cre10g0700 | 1815 | Coils | Coil | 486 | 514 | - | - | |
| Cre10g0700 | 1815 | SMART | topeu | 537 | 913 | IPR013499 | GO:0003677(InterPro)|GO:0003917(InterPro)|GO:0005694(InterPro)|GO:0006265(InterPro) | |
| Cre10g0700 | 1815 | ProSiteProfiles | t-SNARE coiled-coil homology domain profile. | 1115 | 1177 | IPR000727 | - | |
| Cre10g0700 | 1815 | Gene3D | DNA Topoisomerase I, domain 2 | 393 | 608 | IPR013030 | GO:0003677(InterPro)|GO:0003917(InterPro)|GO:0005694(InterPro)|GO:0006265(InterPro) | |
| Cre10g0700 | 1815 | FunFam | DNA topoisomerase I | 412 | 496 | - | - | |
| Cre10g0700 | 1815 | Pfam | Eukaryotic DNA topoisomerase I, catalytic core | 611 | 834 | IPR013500 | GO:0003677(InterPro)|GO:0003917(InterPro)|GO:0006265(InterPro) | |
| Cre10g0700 | 1815 | Gene3D | - | 760 | 937 | IPR014727 | GO:0003677(InterPro)|GO:0003917(InterPro)|GO:0005694(InterPro)|GO:0006265(InterPro) | |
| Cre10g0700 | 1815 | MobiDBLite | consensus disorder prediction | 78 | 129 | - | - | |
| Cre10g0700 | 1815 | Pfam | TAF6 C-terminal HEAT repeat domain | 1446 | 1629 | IPR011442 | GO:0006367(InterPro) | |
| Cre10g0700 | 1815 | Pfam | C-terminal topoisomerase domain | 872 | 933 | IPR025834 | - | |
| Cre10g0700 | 1815 | Gene3D | - | 413 | 496 | IPR013034 | GO:0003917(InterPro)|GO:0006265(InterPro) | |
| Cre10g0700 | 1815 | SUPERFAMILY | SNARE fusion complex | 1106 | 1177 | - | - | |
| Cre10g0700 | 1815 | FunFam | DNA topoisomerase I | 611 | 759 | - | - | |
| Cre10g0700 | 1815 | SUPERFAMILY | DNA breaking-rejoining enzymes | 611 | 936 | IPR011010 | GO:0003677(InterPro) | |
| Cre10g0700 | 1815 | CDD | Topo_IB_C | 617 | 810 | IPR013500 | GO:0003677(InterPro)|GO:0003917(InterPro)|GO:0006265(InterPro) | |
| Cre10g0700 | 1815 | MobiDBLite | consensus disorder prediction | 62 | 335 | - | - | |
| Cre10g0700 | 1815 | PANTHER | DNA TOPOISOMERASE I | 117 | 933 | IPR051062 | GO:0003917(PANTHER)|GO:0005730(PANTHER)|GO:0006260(PANTHER)|GO:0006265(PANTHER)|GO:0007059(PANTHER) | |
| Cre10g0700 | 1815 | SMART | TAF_cls | 1284 | 1350 | IPR004823 | - | |
| Cre10g0700 | 1815 | SMART | tSNARE_6 | 1110 | 1177 | IPR000727 | - | |
| Cre10g0700 | 1815 | SUPERFAMILY | Histone-fold | 1286 | 1358 | IPR009072 | GO:0046982(InterPro) | |
| Cre10g0700 | 1815 | Coils | Coil | 816 | 843 | - | - | |
| Cre10g0700 | 1815 | Gene3D | - | 1117 | 1179 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cre06g0825 | Cre-Chr6:1572091 | Cre10g0700 | Cre-Chr10:6707462 | 7.20E-06 | transposed | |
| Cre09g1057 | Cre-Chr9:10890142 | Cre10g0700 | Cre-Chr10:6707462 | 2.20E-91 | transposed | |
| Cre10g0700 | Cre-Chr10:6707462 | Cre02g0580 | Cre-Chr2:2846982 | 5.00E-164 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cre10g0700 | K03163 | - | csv:101222429 | 1527.3 |