Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre10g0701 ATGGAGAGCATTTTCCAAAATCTTCTTTTGAACCTCTTGGTTGAATCTGATTGCTTAGAGGCCTCGCGAAACTGTAACAATCCTCCGGTTATGGCAACTTTTCAGCTCACAAATCTATCATCTTCTTCAATTCCCCCTCAGTTTCATCTTAACACATCCTTCTTTCCCTCCAACTTTCCCTGGACTTGTTCCTCTTCTAATGCCAAGCGGAAATTTCCGTCTCGAAGACACCATCTTGGTGTTGTGGGCTGCTCATTTTCCCCCATGGAGTCCGCTAAGATTAAGGTTGTGGGAGTTGGTGGAGGCGGCAACAATGCCGTTAATCGCATGATTGGCAGCGGTTTGAAGGGTGTTGATTTCTATGCTATAAACACGGATTCTCAAGCTCTACTACAGTCTGCTGCTGAGAATCCGCTTCAAATTGGAGAGCTTCTGACTCGCGGGCTAGGTACTGGTGGGAATCCACTTTTAGGGGAACAAGCGGCAGAAGAATCAAAAGAAGCGATAGCCGGTGCTCTCAAGGGCTCTGATCTTGTATTTATAACGGCAGGTATGGGTGGAGGCACTGGGTCTGGTGCAGCCCCTGTCGTTGCTCAGATTTCGAAGGAGGCAGGTTATCTTACTGTTGGTGTTGTTACTTTTCCATTCAGTTTTGAAGGAAGAAAACGATCCTTGCAGGCGCTGGAGGCCATTGAAAAGTTGCAGAAAAATGTTGACACTCTTATAGTGATTCCCAATGATCGATTGCTTGATATTGCTGATGAACAGACACCTCTTCAAGATGCTTTCCTTCTTGCTGATGATGTCCTACGTCAAGGAGTACAAGGAATTTCTGATATAATTACGATTCCAGGTCTGGTCAATGTGGATTTTGCTGACGTAAAAGCCGTAATGAAAGACTCAGGAACTGCAATGCTCGGAGTTGGTGTTTCCTCTAGCAAAAATCGTGCAGAAGAGGCAGCTGAGCAAGCAACTTTGGCCCCGTTGATTGGATCCTCAATTCAGTCAGCTACAGGAGTAGTATATAACATTACTGGAGGAAAGGACATTACTCTCCAGGAAGTGAACAGAGTGTCTCAGGTTGTGACAAGTTTGGCAGATCCATCTGCAAACATAATATTTGGAGCAGTTGTGGATGATAGATACAGTGGAGAAATCCATGTAACTATAATTGCAACAGGGTTCTCTCAATCCTTTCAGAAGACATTGTTAGCTGACCCCAGGGCTTCAAAACTTATTGATAAAGTGACTGGAGGAGGTCAAGAAAAAAGTAGCAAGGCTTCTTCAACCCTCCCTCTTAACTTATCGCCTGCTGCTTCACCGACGCTTCCTAATCGAGGTCGAAGGCTCTTCTTTTAG 1359 45.11 MESIFQNLLLNLLVESDCLEASRNCNNPPVMATFQLTNLSSSSIPPQFHLNTSFFPSNFPWTCSSSNAKRKFPSRRHHLGVVGCSFSPMESAKIKVVGVGGGGNNAVNRMIGSGLKGVDFYAINTDSQALLQSAAENPLQIGELLTRGLGTGGNPLLGEQAAEESKEAIAGALKGSDLVFITAGMGGGTGSGAAPVVAQISKEAGYLTVGVVTFPFSFEGRKRSLQALEAIEKLQKNVDTLIVIPNDRLLDIADEQTPLQDAFLLADDVLRQGVQGISDIITIPGLVNVDFADVKAVMKDSGTAMLGVGVSSSKNRAEEAAEQATLAPLIGSSIQSATGVVYNITGGKDITLQEVNRVSQVVTSLADPSANIIFGAVVDDRYSGEIHVTIIATGFSQSFQKTLLADPRASKLIDKVTGGGQEKSSKASSTLPLNLSPAASPTLPNRGRRLFF 452
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 6731920 6737096 - CrPI670011_10g007010.1 Cre10g0701 510003

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre10g0701 452 ProSitePatterns FtsZ protein signature 1. 124 158 IPR020805 GO:0005525(InterPro)
Cre10g0701 452 PANTHER CELL DIVISION PROTEIN FTSZ-RELATED 64 427 IPR045061 GO:0003924(PANTHER)|GO:0003924(InterPro)|GO:0005525(InterPro)|GO:0005525(PANTHER)|GO:0005737(PANTHER)|GO:0009507(PANTHER)|GO:0010020(PANTHER)|GO:0032153(PANTHER)|GO:0048285(PANTHER)|GO:0051301(PANTHER)
Cre10g0701 452 MobiDBLite consensus disorder prediction 416 444 - -
Cre10g0701 452 NCBIfam cell division protein FtsZ 88 402 IPR000158 GO:0003924(InterPro)|GO:0005525(InterPro)
Cre10g0701 452 Hamap Cell division protein FtsZ [ftsZ]. 89 418 IPR000158 GO:0003924(InterPro)|GO:0005525(InterPro)
Cre10g0701 452 PRINTS Cell division protein FtsZ signature 178 198 IPR003008 GO:0005525(InterPro)
Cre10g0701 452 PRINTS Cell division protein FtsZ signature 206 227 IPR003008 GO:0005525(InterPro)
Cre10g0701 452 PRINTS Cell division protein FtsZ signature 292 313 IPR003008 GO:0005525(InterPro)
Cre10g0701 452 PRINTS Cell division protein FtsZ signature 269 291 IPR003008 GO:0005525(InterPro)
Cre10g0701 452 SMART Tubulin_4 93 285 IPR003008 GO:0005525(InterPro)
Cre10g0701 452 CDD FtsZ_type1 109 394 IPR000158 GO:0003924(InterPro)|GO:0005525(InterPro)
Cre10g0701 452 ProSitePatterns Tubulin subunits alpha, beta, and gamma signature. 186 192 IPR017975 GO:0005525(InterPro)|GO:0005874(InterPro)|GO:0007017(InterPro)
Cre10g0701 452 FunFam Cell division protein FtsZ 1, chloroplastic 86 300 - -
Cre10g0701 452 Pfam Tubulin/FtsZ family, GTPase domain 93 253 IPR003008 GO:0005525(InterPro)
Cre10g0701 452 SUPERFAMILY Tubulin C-terminal domain-like 287 402 IPR008280 -
Cre10g0701 452 MobiDBLite consensus disorder prediction 421 441 - -
Cre10g0701 452 SMART Tubulin_C_4 287 404 IPR018316 -
Cre10g0701 452 Pfam FtsZ family, C-terminal domain 302 395 IPR024757 -
Cre10g0701 452 Gene3D - 301 406 IPR037103 -
Cre10g0701 452 SUPERFAMILY Tubulin nucleotide-binding domain-like 92 288 IPR036525 -
Cre10g0701 452 ProSitePatterns FtsZ protein signature 2. 177 198 IPR020805 GO:0005525(InterPro)
Cre10g0701 452 Gene3D Tubulin/FtsZ, GTPase domain 86 300 IPR036525 -
Cre10g0701 452 FunFam Cell division protein FtsZ 1, chloroplastic 258 395 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre10g0701 K03531 - - csv:101222908 738.028
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre04g1098 Cre-Chr4:29653463 Cre10g0701 Cre-Chr10:6731920 1.20E-101 dispersed
Cre10g0701 Cre-Chr10:6731920 Cre10g2016 Cre-Chr10:34814169 3.00E-102 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g585 . . . . . . Bma10g00581 Bma13g01095 . Cmo06g00884 . . . . . . . . . . . . . . Cla10g00460 Cam10g0446 Cec10g0469 Cco10g0457 Clacu10g0467 Cmu10g1296 Cre10g0701 Cone6ag0040 Cone9ag0046 . . . Csa03g00458 . Cme06g02820 Blo07g00880 Blo10g00853 . Bda12g00939 . . . . . . . . . . . . . Bhi11g00549 . . . . Mch10g1390 . . . . . . . . Lsi05g00545 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006787 2 1 2 2 2 1 2 1 1 1 1 1 1 1 1 2 1 2 1 1 1 1 1 1 1 1 1 1 1 1 37