Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre10g0724 ATGAGGAGAGGGAGAGGGGCGGCGGTGCCGGTACCGGCGGCGCGTGAACCACCTACCACCGGATCGGAACGGAGATACAGAGGAGTTCGTAAAAGGCCATGGGGAAGATTCGCGGCGGAGATCAGAGACCCTTGGAAGAAGACAAGAGTTTGGTTAGGGACCTTCGATTCCGCCGAAGACGCCGCCCGTGCTTACGATAACGCCGCCATAACCCTCCGAGGCCCTAAAGCTAAAACCAATTTCCCTCTTCCTAATCCCACTTCGTTTTTCGATTACCCTCCTTTCCCTCCTCATCCCGTCAACGCTCCAGATCCCTTCCCCGATTCCCGATTTCAGATTAACCCTCATAGACCTACTTCCAGCAGTTTGAGCTCCACCGTCGAATCCTTCAGCGGTCCTCGCCCTCCCTCCGCCGCCGCTACTACGACCACTTCCCCCTCCCGCCGTTACCCACGTACACCGCCTCTCCTCCCTGAAGATTGCCATAGCGATTGTGATTCTTCCTCTTCCGTCATCGACGATGGCGACGACATCGCTTCCTCCTCCATCCTTCCTCGGAAACCACCTCTGCCTTTCGATCTCAACATTCCACCTTCCGATCTTCTTGATTTTACCGCCGATGATCTTCGATGTACCGCTTTGTGCCTCTGA 651 56.07 MRRGRGAAVPVPAAREPPTTGSERRYRGVRKRPWGRFAAEIRDPWKKTRVWLGTFDSAEDAARAYDNAAITLRGPKAKTNFPLPNPTSFFDYPPFPPHPVNAPDPFPDSRFQINPHRPTSSSLSSTVESFSGPRPPSAAATTTTSPSRRYPRTPPLLPEDCHSDCDSSSSVIDDGDDIASSSILPRKPPLPFDLNIPPSDLLDFTADDLRCTALCL 216
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 7001235 7001885 - CrPI670011_10g007240.1 Cre10g0724 510026
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre10g0724 216 Gene3D AP2/ERF domain 24 83 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre10g0724 216 SMART rav1_2 25 88 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre10g0724 216 FunFam Ethylene-responsive transcription factor 2 24 83 - -
Cre10g0724 216 SUPERFAMILY DNA-binding domain 25 83 IPR016177 GO:0003677(InterPro)
Cre10g0724 216 ProSiteProfiles AP2/ERF domain profile. 25 82 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre10g0724 216 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 14 174 - -
Cre10g0724 216 MobiDBLite consensus disorder prediction 94 169 - -
Cre10g0724 216 PRINTS Ethylene responsive element binding protein signature 48 64 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre10g0724 216 PRINTS Ethylene responsive element binding protein signature 26 37 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre10g0724 216 MobiDBLite consensus disorder prediction 1 28 - -
Cre10g0724 216 CDD AP2 25 82 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre10g0724 216 MobiDBLite consensus disorder prediction 113 150 - -
Cre10g0724 216 Pfam AP2 domain 25 74 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre01g0389 Cre-Chr1:3268466 Cre10g0724 Cre-Chr10:7001235 5.10E-52 dispersed
Cre07g0612 Cre-Chr7:3927848 Cre10g0724 Cre-Chr10:7001235 6.00E-24 dispersed
Cre09g0301 Cre-Chr9:2940898 Cre10g0724 Cre-Chr10:7001235 1.30E-19 dispersed
Cre09g2382 Cre-Chr9:43184853 Cre10g0724 Cre-Chr10:7001235 2.30E-17 dispersed
Cre09g2445 Cre-Chr9:43802491 Cre10g0724 Cre-Chr10:7001235 6.60E-20 dispersed
Cre10g0488 Cre-Chr10:3977494 Cre10g0724 Cre-Chr10:7001235 5.90E-19 dispersed
Cre10g0724 Cre-Chr10:7001235 Cre11g2185 Cre-Chr11:33557710 1.50E-22 dispersed
Cre10g0724 Cre-Chr10:7001235 Cre02g2124 Cre-Chr2:34810046 5.70E-51 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54501 PF00847 AP2 5.00E-14 CL0081 Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre10g0724 K09286 - csv:101219993 295.049