Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre10g0732 ATGTTGGAGGTGGATGGTGCTAGTATGGAGGTTGGTGAGGTTTTGGCTTCTACACATGCTCTTGGACCAATTGGTTGGTTCCCTCCTTCGAGGGTTTCAAATTCTTCCTTAGTTCCAGCAATCTACGTGTTTGGAGACTCATTAGTGGATGTTGGAAACAACAACCACTTGAAGCTCTCACTAGCCAAAGCCAACTTTCCCCACAATGGACTTGATTTTCCTACCAACAAGCCCACCGGAAGGTTCTCTAATGGCAAGAATGCTGCCGACTATATTGCTGAGAAGGTGGGGTTGCCGACTTCGCCGCCATATTTGTCTCTCATATCCAAGTTTAGAAAGATTATCAACACGACACCGTTTAAGACAGGCGTCAGCTTCGCTTCTGGAGGAGCCGGAATTTTTAATGAAACAAATAATCTTTTTAAACAATCGGTGACAATGGACCAACAAATAGTGTTCTATTCAACGGTGTACAAAAATCTGGTAGGAGAGCTGGGATCGTCTGGAGCGGCAGCACACCTATCCAAATCTCTATTTACGGTTGTGATTGGAAGTAACGACATCTTCGGCTATCATCAGTCGTCCGATCTGCGTAATAAGTACTCCCCACAGCAATACTTGGACTTGATGGCCTCCACTCTGGAGTCGCAGCTTAAGCGATTACATGGATATGGGGCAAGAAAATATGTGGTGGGTGGAATTGGATTAGTGGGGTGTGCACCATCACAAAGGAAGAGAAGCAAAACAGGGGAATGCGATGAGGAAGTCAATAATTGGGCCTCAACTTACAACATTGCTCTAAAGTCAATGCTTCAAAGACTAAAATTGGAGCTCAAAGACATTTCATTCTCCTACTTTGATGTATATCAAGTCATGTCCAACTTCGTTCGTACGCCATCTTCTTATGGATTCACAGAGATTAGAAGTGCTTGTTGTGGGCTTGGGAATTTGAAGGCAGATGTTCCTTGTTTACCAATTGCAACATTTTGCTCAAATAGAAGCAACCATCTCTTTTGGGATCTCTATCATCCTACACAACAAGCCCATCAAATACCACGTGCTTCGTTCAGCCTCAAACCTCCACTCCACCATCCGCCGTCCATTCACCTTACCGTCGACCCAGTCGCCGCAGCCGTCACATCGGCGCACCTCGATCGAGGTTCCAGTCGTCTCTCTCGCGTCTTCCGCCCAGTTTGTTCTCGGTCGGTCGGCGACGCTGTTGAGCATCGCGCGTCCTTGGTCCAGTCAGCCCACTGTAGTTCGGCACCACTAGCACTAAGGGTCGCCGGAATTTCAAAATTTGGTATAGATTTGACTTTAGACCAGTCAAACTCAATCTCAAGCTGCCGCCGCCACCTCCCCGTGTCGTTGCCGTCGCCGGTTGTCGCTGTTGCTTGTTCTCTTAGTGGGAAGATGGAATCCTCCGTGATGGCAGCTGAGCGCATTCTTTCGTATAATTTCAAGAACAAGAAGCTCTTAGAAGAAGCACTCACCCACTCCTCCTACTTCGACTCTGCCTCCTATGAGCGCCTCGAGTTTATCGGCGATTCAGCTATTGGCCTCGCTATTACTAATTATTTCTTTCTTGCTTATCCAGACCTCCATCAAGGCCAACTATCTTTACTTAGGGCTGCTAACATTAGCACCGAGAAGCTTGCTCGTGTTGCAGTCCGCCATGGATTGTATAACTATGTTAGGCGCAACGCCGCCGCTCTCGATGACAAGGTTAGAGAGTTCGTCGATTCCGTCGCCCTAGAACATAACTCAGTTCCGTATGGTGGGTTGGTGAAGGCTCCTAAAGTTCTTGCTGACATTGTGGAATCTGTAGCTGGTGCTGTCTATGTAGATGTTAATTTTGATCTTCAAAGACTATGGGTGATAATTAGGGGTTTGTTAGAGCCTATCTATACTCTTGAAGACTTACAAGTAGAGCCCCAACCTGTAACCGTGCTCTTTGAAGTTTGCCAAAAAAATGGGAAGCAGGTAGATATCAAGAATTGGAAAAACGGTTCCAAGAACGTTGCAAGTGTTTATGTCGACGGTAGTTTTGTTGCTTCCGGCACTTCAATGCAAAAAGAAATTGCAAGGCTTAATGCTGCCAGAGAAGCTCTCATTAAATTGTCGGATTTCATGGACACCAGAATTAGAACGGTTGTAACTATTGATGGTATCGATGAATCGTTTGAGATTGAAGGGGCAAAGCATAAGCTACATGATTTTTGTTGCAAGAAAAAGTGGCCGAAACCAAATTACAGTACTGAGAAAGATTTAGGACCTTCACATGAAAGGAGATTTGTTTGCTCTGTTAAGATTTCCACTTCTTCCGGTACGCTCTATATGATGGGAGATGAGAAGTCAAGAGTAAAGGATGCAGAGAATTCTGCAGCCTCTTTGATGATTCGTGCTTTACAGGAAAGAAACTATCTCTAA 2430 45.51 MLEVDGASMEVGEVLASTHALGPIGWFPPSRVSNSSLVPAIYVFGDSLVDVGNNNHLKLSLAKANFPHNGLDFPTNKPTGRFSNGKNAADYIAEKVGLPTSPPYLSLISKFRKIINTTPFKTGVSFASGGAGIFNETNNLFKQSVTMDQQIVFYSTVYKNLVGELGSSGAAAHLSKSLFTVVIGSNDIFGYHQSSDLRNKYSPQQYLDLMASTLESQLKRLHGYGARKYVVGGIGLVGCAPSQRKRSKTGECDEEVNNWASTYNIALKSMLQRLKLELKDISFSYFDVYQVMSNFVRTPSSYGFTEIRSACCGLGNLKADVPCLPIATFCSNRSNHLFWDLYHPTQQAHQIPRASFSLKPPLHHPPSIHLTVDPVAAAVTSAHLDRGSSRLSRVFRPVCSRSVGDAVEHRASLVQSAHCSSAPLALRVAGISKFGIDLTLDQSNSISSCRRHLPVSLPSPVVAVACSLSGKMESSVMAAERILSYNFKNKKLLEEALTHSSYFDSASYERLEFIGDSAIGLAITNYFFLAYPDLHQGQLSLLRAANISTEKLARVAVRHGLYNYVRRNAAALDDKVREFVDSVALEHNSVPYGGLVKAPKVLADIVESVAGAVYVDVNFDLQRLWVIIRGLLEPIYTLEDLQVEPQPVTVLFEVCQKNGKQVDIKNWKNGSKNVASVYVDGSFVASGTSMQKEIARLNAAREALIKLSDFMDTRIRTVVTIDGIDESFEIEGAKHKLHDFCCKKKWPKPNYSTEKDLGPSHERRFVCSVKISTSSGTLYMMGDEKSRVKDAENSAASLMIRALQERNYL 809
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 7078256 7095673 - CrPI670011_10g007320.1 Cre10g0732 510034

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre10g0732 809 SUPERFAMILY RNase III domain-like 475 637 IPR036389 GO:0004525(InterPro)|GO:0006396(InterPro)
Cre10g0732 809 Gene3D - 731 806 - -
Cre10g0732 809 SMART DRBM_3 733 804 IPR014720 -
Cre10g0732 809 SMART DRBM_3 647 708 IPR014720 -
Cre10g0732 809 SUPERFAMILY dsRNA-binding domain-like 732 807 - -
Cre10g0732 809 PANTHER GDSL LIPASE/ACYLHYDROLASE FAMILY PROTEIN (AFU_ORTHOLOGUE AFUA_4G14700) 33 354 IPR051058 -
Cre10g0732 809 Pfam Ribonuclease III domain 509 616 IPR000999 GO:0004525(InterPro)|GO:0006396(InterPro)
Cre10g0732 809 SUPERFAMILY dsRNA-binding domain-like 600 707 - -
Cre10g0732 809 Gene3D SGNH hydrolase 29 356 IPR036514 -
Cre10g0732 809 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 646 709 IPR014720 -
Cre10g0732 809 SUPERFAMILY SGNH hydrolase 40 351 - -
Cre10g0732 809 CDD SGNH_plant_lipase_like 39 351 IPR035669 -
Cre10g0732 809 Gene3D Ribonuclease III domain 470 642 IPR036389 GO:0004525(InterPro)|GO:0006396(InterPro)
Cre10g0732 809 Pfam GDSL-like Lipase/Acylhydrolase 41 351 IPR001087 GO:0016788(InterPro)
Cre10g0732 809 Pfam Double-stranded RNA binding motif 733 803 IPR014720 -
Cre10g0732 809 Pfam Double-stranded RNA binding motif 647 707 IPR014720 -
Cre10g0732 809 Gene3D - 643 713 - -
Cre10g0732 809 SMART riboneu5 491 641 IPR000999 GO:0004525(InterPro)|GO:0006396(InterPro)
Cre10g0732 809 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 732 805 IPR014720 -
Cre10g0732 809 ProSiteProfiles Ribonuclease III family domain profile. 476 618 IPR000999 GO:0004525(InterPro)|GO:0006396(InterPro)
Cre10g0732 809 CDD RIBOc 491 641 IPR000999 GO:0004525(InterPro)|GO:0006396(InterPro)
Cre10g0732 809 FunFam Endoribonuclease dicer-like 1 471 639 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre10g0732 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre10g0732 Cre-Chr10:7078256 Cre11g1319 Cre-Chr11:12861832 3.10E-57 dispersed
Cre10g0732 Cre-Chr10:7078256 Cre10g0734 Cre-Chr10:7119662 1.20E-98 proximal
Cre05g0063 Cre-Chr5:828662 Cre10g0732 Cre-Chr10:7078256 2.20E-46 transposed
Cre08g0916 Cre-Chr8:22320830 Cre10g0732 Cre-Chr10:7078256 4.90E-28 transposed
Cre10g0732 Cre-Chr10:7078256 Cre02g0546 Cre-Chr2:2564736 4.80E-42 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g551 . . . . . . Bma10g00566 . Cmo16g00936 . . . . . . . . . . . . . . . Cla10g00491 Cam10g0482 Cec10g0500 Cco10g0486 Clacu10g0502 Cmu10g1329 Cre10g0732 . . . . . Csa03g00495 . Cme06g02859 Blo07g00892 . Bda05g00709 . . Bpe03g00781 . . Sed08g1364 . . . Cma16g00900 . Car16g00876 Cpe14g00724 . Bhi11g00594 Tan01g1726 Cmetu06g2572 . Hepe06g0003 . . . . . . . . . Lsi05g00580 . Chy06g01831 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004196 1 1 1 2 2 1 1 1 1 2 1 1 1 2 2 1 1 2 1 1 4 2 1 0 1 1 0 3 3 1 42