Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre10g0787 ATGGTTTCCCCTGAAACCACCAATTGGCTCTTTGATTATGCGTTAATGGATGATATTCCTGTTTCCGATGCCAATTTCTCTCCACCCACTACCGGCTTTTCCTGGTCTATGACTCCCCTCAACGGCTCCGCCAATGTCAGCACGGAAATTGAAGGATCACTGCTAGAATCGGATGGCCTGAAGGAGCCTGGTTCAAAGAAGAGGGTCAGAACTGAATCAAGTTGTGCATCTAGCTCGAAAGCCTGTAGGGAAAAGCTGCGGAGGGACAGACTAAATGACAAGTTTCTCGAATTGGGCGCTATTCTGGAGCCAGGTAGACCACCTAAGACCGACAAGGCTGTCATTTTGATCGATGCTGTTCGGATGGTCACTCAGTTACGTGGTGAAGCCCAGATGTTGAAGGATTCAAATACAAGTCTATCAGAGAAGATTAAAGAGTTGAAGGCTGAAAAGAATGAGCTTCGTGATGAGAAACAGAGGTTAAAAGTGGAGAAAGAGAAGTTGGAACAGCAACTAAAAGCCATGAATTCACAACCTGGCTTCTTGCCTCCAGCCATCCCTGCCACTTTTGCTGCTCAAGGCCAAGCACCTGGAAACAAGTTGGTTCCTTTCATCGGCTACCCCGGAGTTGCCATGTGGCAGTTCATGCCACCTGCAGCAGTCGACACCTCACAAGATCACGTACTCCGACCTCCTGTTGCTTAA 705 48.23 MVSPETTNWLFDYALMDDIPVSDANFSPPTTGFSWSMTPLNGSANVSTEIEGSLLESDGLKEPGSKKRVRTESSCASSSKACREKLRRDRLNDKFLELGAILEPGRPPKTDKAVILIDAVRMVTQLRGEAQMLKDSNTSLSEKIKELKAEKNELRDEKQRLKVEKEKLEQQLKAMNSQPGFLPPAIPATFAAQGQAPGNKLVPFIGYPGVAMWQFMPPAAVDTSQDHVLRPPVA 234
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 7746780 7750135 + CrPI670011_10g007870.1 Cre10g0787 510089
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre10g0787 234 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 80 150 IPR036638 GO:0046983(InterPro)
Cre10g0787 234 Coils Coil 130 178 - -
Cre10g0787 234 Pfam Helix-loop-helix DNA-binding domain 79 127 IPR011598 GO:0046983(InterPro)
Cre10g0787 234 CDD bHLH_AtILR3_like 83 155 - -
Cre10g0787 234 PANTHER BHLH TRANSCRIPTION FACTOR 7 234 IPR044818 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0006879(InterPro)|GO:0046983(InterPro)
Cre10g0787 234 SMART finulus 81 132 IPR011598 GO:0046983(InterPro)
Cre10g0787 234 FunFam Transcription factor bHLH34 66 124 - -
Cre10g0787 234 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 75 126 IPR011598 GO:0046983(InterPro)
Cre10g0787 234 Gene3D - 78 155 IPR036638 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre10g0787 Cre-Chr10:7746780 Cre06g2494 Cre-Chr6:32670696 2.70E-06 dispersed
Cre02g1168 Cre-Chr2:10832553 Cre10g0787 Cre-Chr10:7746780 1.00E-59 transposed
Cre05g0531 Cre-Chr5:4731363 Cre10g0787 Cre-Chr10:7746780 2.90E-26 transposed
Cre05g1645 Cre-Chr5:27158309 Cre10g0787 Cre-Chr10:7746780 1.30E-77 transposed
Cre10g0787 Cre-Chr10:7746780 Cre03g0802 Cre-Chr3:6767932 4.00E-58 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54503 PF00010 HLH 2.80E-09 No_clan Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre10g0787 - - - 0.0