Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre10g0804 ATGGCGGAGGAGTTTCAGAGCACTGGAAACTGGTGGGAGGCTTCTAGAAATCGCTACGAAGCCGGAATATCCCCTTCCTCCTCCTCCATCACCACCTTCGTCGACCACTCCGACTCCGCCGCCGCCGCCGCCTCCGATCCCAATTTGCACATCATGGGCTTAGGCCTCGATTGGAATCAACCCCTCTTTAGGGGCGGCGGAGAGAAGGCGGCGGAGGGAAGTTTCCGGTCGATGCTACAGCCGGAAACTATGAATTTAAATATGCAAGAAACAGGGCAGCAGCAGCAGCAGCAGCAACAGATTCAATGGATGAGATCGGAGAAGCTATATTCAGGGGAGTCTCCGGCGACCGAATTTAAGGCAATAAACAGAGGATTTTCATTAGATCATCATCAAGCTCAACCCCAGTTCAGTAGCCCTTCTCACTACAGCTCCGGTGACAGTACCGTCACCAGTTTTCCGATCGACACCGCCGCCAATTTATACGGAAATTCCGCAACATTATTACAAGGCTTATTAGCCAGCGGCGGGGAGCAGCAGCAGCAACAGCAACAACAACAACAAGTCTCAGCGGCTGTAGGTATGAACTACCCTTACAATTCCCATTTCGGAATGAACTCCGGCGAGTTAATGGCGGGAGGAGCGTCGTGGTCGCCGTCTAAAGTGCCTCAGTTTTTAAGAAACTCACCGCCAAAAGGGGCGGCGGCGGCAACTCCACATAGTCAGTTACAATTTTCGAACAACACGGCGTTCTGGAACGCGTCGGATATGAAAGACGTGAGACCCAGTTATTTTCCGGCGTCGTACAACACCGCTGCAGCTTTCGCCGATAAATCAAAGAATATATCGGAGGTTGGTGATTCGGTAACAACAGTAGGAAAAAAAAGTGGAAATGATCACAATCAGCAATCCGCCGCTGCTAAAAGGCCTCGAAATGAAACTCCTTCGCCATTGCCAGCTTTTAAGGTGAGGAAAGAGAAGATGGGGGACAGAATCACTGCGCTCCAACAACTCGTTTCACCTTTCGGAAAGACTGATACAGCCTCAGTGCTGTCTGAAGCAATTGAATACATAAAGTTCCTCCATGAACAAGTCAGTGTTTTGAGCACTCCATATTTGAAGAGTGGAGCTGCAGTACAGCAACAACATCAGCAGCAGAGATGTGAGAAATCAAAGGAAGGAGAAGGAGGAAAGCAAGATCTAAGAAGCAGAGGGCTTTGTTTAGTTCCAGTTTCAAGTACATTTCCAGTCACTCACGAAACCACAGTTGATTTTTGGACTCCAACCTTCGGAGGAACCTTCAGATAA 1308 49.31 MAEEFQSTGNWWEASRNRYEAGISPSSSSITTFVDHSDSAAAAASDPNLHIMGLGLDWNQPLFRGGGEKAAEGSFRSMLQPETMNLNMQETGQQQQQQQQIQWMRSEKLYSGESPATEFKAINRGFSLDHHQAQPQFSSPSHYSSGDSTVTSFPIDTAANLYGNSATLLQGLLASGGEQQQQQQQQQQVSAAVGMNYPYNSHFGMNSGELMAGGASWSPSKVPQFLRNSPPKGAAAATPHSQLQFSNNTAFWNASDMKDVRPSYFPASYNTAAAFADKSKNISEVGDSVTTVGKKSGNDHNQQSAAAKRPRNETPSPLPAFKVRKEKMGDRITALQQLVSPFGKTDTASVLSEAIEYIKFLHEQVSVLSTPYLKSGAAVQQQHQQQRCEKSKEGEGGKQDLRSRGLCLVPVSSTFPVTHETTVDFWTPTFGGTFR 435
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 8059872 8063853 - CrPI670011_10g008040.1 Cre10g0804 510106
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre10g0804 435 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 102 414 IPR045843 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006357(PANTHER)
Cre10g0804 435 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 312 361 IPR011598 GO:0046983(InterPro)
Cre10g0804 435 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 322 376 IPR036638 GO:0046983(InterPro)
Cre10g0804 435 MobiDBLite consensus disorder prediction 289 310 - -
Cre10g0804 435 Gene3D - 322 392 IPR036638 GO:0046983(InterPro)
Cre10g0804 435 CDD bHLH_AtbHLH_like 318 369 IPR045239 -
Cre10g0804 435 MobiDBLite consensus disorder prediction 289 318 - -
Cre10g0804 435 FunFam Transcription factor bHLH123 family 322 386 - -
Cre10g0804 435 SMART finulus 323 367 IPR011598 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g1007 Cre-Chr2:7686133 Cre10g0804 Cre-Chr10:8059872 9.00E-16 dispersed
Cre04g1855 Cre-Chr4:36242114 Cre10g0804 Cre-Chr10:8059872 8.60E-56 dispersed
Cre05g2045 Cre-Chr5:32442787 Cre10g0804 Cre-Chr10:8059872 6.90E-27 dispersed
Cre07g1674 Cre-Chr7:32189021 Cre10g0804 Cre-Chr10:8059872 1.60E-23 dispersed
Cre08g1429 Cre-Chr8:27268475 Cre10g0804 Cre-Chr10:8059872 1.20E-20 dispersed
Cre09g0177 Cre-Chr9:1995004 Cre10g0804 Cre-Chr10:8059872 4.50E-16 dispersed
Cre10g0804 Cre-Chr10:8059872 Cre02g2023 Cre-Chr2:33718261 1.60E-07 dispersed
Cre07g1880 Cre-Chr7:34222132 Cre10g0804 Cre-Chr10:8059872 2.80E-25 transposed
Cre11g0574 Cre-Chr11:2862151 Cre10g0804 Cre-Chr10:8059872 6.30E-28 transposed
Cre10g0804 Cre-Chr10:8059872 Cre03g0818 Cre-Chr3:6937125 4.00E-35 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre10g0804 - - - 0.0