Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cre10g0810 | ATGTCCCCAATCAAACCTCCACCACTAAACCGACCGGAGTTTCGAACAATGGCCATTAGAACCGCTTTCGAAAAAGCCGTCGAGGCTCAAAATTATGCAACCCGGTTTGGTCCGAGCTGTAAAACCACGCGCCAGAGAGCCGCGTGGACTGACTGTTTGAAGCTGTACAACGACGTCGTTTTCCAATTAAACCGTACCCTCCAATGCGTTCTTAGCGACGGAACAATCCAACGCCGCCGTTGTACGGATTTCGATGCGCAAACGTGGCTTAGCTCTGCTCTTACTGACATCGATTTGTGCCTCTCCGGCGCGGCGGATCTCAATGTGACGGATTTTATAGCTCCGATCAAATGCCAGAATGTTTCCAAGATGATTAGTAATTGCTTGGCCATTAATGGGGTATTTTTAAAAGAAGGGGTTAAAAGTGTAAATAGAATCGGAGAGGAGTTTGATCAAAATGGGTCGTTTCCGATGTGGGTTTCGGATGGTGATCGGAAATTGTTGCAGTCGTCCGCTAAGGTGAGGGCTAATTTAGTGGTGGCGAAAGATGGGTCTGGGAAATTTCGGACGGTTCAGGCGGCGATCGATGCGGCGGCGAGGAGGCGTGGGAGGGGGCGATTTGTAATTTATGTAAAACGAGGGGTTTATAGAGAAAATATTGAAGTTGGGAATGATAATGGGAATTTAATGTTGGTGGGAGATGGGATGAGATTTACTGTGATTACAAGTGGAAGAAGCGTCGCCGCCGGCTTCACCACCTTCAGTTCTGCAACCGCTGGTATTCAAGGTCCAGGCTTCATCGCTCGAGACATAAGGTTCGTAAACACAGCCGGTCCACGAATGGGCCAAGCAGTTGCACTACGATCATCCTCGGACCTATCTGTGTTCCATCGATGCAGCTTCGAGGGCTACCAAGACACTCTAATGGTACTCTCACAAAGACAGTTCTACAAACAATGTTACATTTACGGTACAATTGACTTCATCTTTGGGAACGCAGCAGTAGTTTTACAAAATTGCATGATTTACGTAAGGAGGCCTTTAAAGGGCCAAGTCAATGTCATAACTGCCCAAGGCCGAGAGGACCCGTTTCAGAACAGCGGAATCTCCATCCACAACTCTCAAATACGAGCCGCTGCTGATTTGCGGCCCATGATTGGCTCGGTCAAGACGTACATGGGTAGGCCCTGGAAGAAGTATTCGCGGACAGTCATTATGAGAAGCTACATTGATAGCTTGGTCAGCCCAGCCGGGTGGTTGGCGTGGCAAAAAAGTAAATTTGCTCAAGCTACGTTGTATTATGGGGAGTATCGTAATATTGGGCCTAGGGCTTCCACACGGTTTAGAGTCAAATGGCCGGGTTTTCATGTTATTAGAAGCCCAAATGTGGCTTCTAAGTTCACTGTCCAGAGACTCATCGCCGGCCAAACTTGGCTTCCGGCCACCGGAGTTCCCTTCAAGCTTGGCCTATGA | 1473 | 48.61 | MSPIKPPPLNRPEFRTMAIRTAFEKAVEAQNYATRFGPSCKTTRQRAAWTDCLKLYNDVVFQLNRTLQCVLSDGTIQRRRCTDFDAQTWLSSALTDIDLCLSGAADLNVTDFIAPIKCQNVSKMISNCLAINGVFLKEGVKSVNRIGEEFDQNGSFPMWVSDGDRKLLQSSAKVRANLVVAKDGSGKFRTVQAAIDAAARRRGRGRFVIYVKRGVYRENIEVGNDNGNLMLVGDGMRFTVITSGRSVAAGFTTFSSATAGIQGPGFIARDIRFVNTAGPRMGQAVALRSSSDLSVFHRCSFEGYQDTLMVLSQRQFYKQCYIYGTIDFIFGNAAVVLQNCMIYVRRPLKGQVNVITAQGREDPFQNSGISIHNSQIRAAADLRPMIGSVKTYMGRPWKKYSRTVIMRSYIDSLVSPAGWLAWQKSKFAQATLYYGEYRNIGPRASTRFRVKWPGFHVIRSPNVASKFTVQRLIAGQTWLPATGVPFKLGL | 490 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 8413219 | 8416078 | + | CrPI670011_10g008100.1 | Cre10g0810 | 510112 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cre10g0810 | 490 | Gene3D | - | 171 | 490 | IPR012334 | - | |
Cre10g0810 | 490 | FunFam | Pectinesterase | 171 | 490 | - | - | |
Cre10g0810 | 490 | CDD | PMEI-like_3 | 7 | 137 | - | - | |
Cre10g0810 | 490 | ProSitePatterns | Pectinesterase signature 1. | 203 | 222 | IPR018040 | - | |
Cre10g0810 | 490 | SUPERFAMILY | Pectin lyase-like | 174 | 489 | IPR011050 | - | |
Cre10g0810 | 490 | SUPERFAMILY | Plant invertase/pectin methylesterase inhibitor | 8 | 135 | IPR035513 | - | |
Cre10g0810 | 490 | SMART | PMEI_2 | 2 | 131 | IPR006501 | GO:0004857(InterPro) | |
Cre10g0810 | 490 | ProSitePatterns | Pectinesterase signature 2. | 322 | 331 | IPR033131 | - | |
Cre10g0810 | 490 | Gene3D | Invertase/pectin methylesterase inhibitor family protein | 2 | 134 | IPR035513 | - | |
Cre10g0810 | 490 | PANTHER | PECTINESTERASE | 20 | 481 | - | GO:0030599(PANTHER)|GO:0046910(PANTHER) | |
Cre10g0810 | 490 | Pfam | Plant invertase/pectin methylesterase inhibitor | 12 | 131 | IPR006501 | GO:0004857(InterPro) | |
Cre10g0810 | 490 | NCBIfam | pectinesterase inhibitor domain | 9 | 133 | IPR006501 | GO:0004857(InterPro) | |
Cre10g0810 | 490 | Pfam | Pectinesterase | 177 | 475 | IPR000070 | GO:0030599(InterPro)|GO:0042545(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cre09g2047 | Cre-Chr9:39579314 | Cre10g0810 | Cre-Chr10:8413219 | 1.10E-151 | dispersed | |
Cre09g2465 | Cre-Chr9:43976047 | Cre10g0810 | Cre-Chr10:8413219 | 4.90E-108 | dispersed | |
Cre10g0810 | Cre-Chr10:8413219 | Cre11g1871 | Cre-Chr11:30372525 | 4.00E-92 | dispersed | |
Cre10g0810 | Cre-Chr10:8413219 | Cre05g0907 | Cre-Chr5:8309567 | 3.60E-154 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cre10g0810 | K01051 | - | csv:101213944 | 853.588 |