Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre10g0821 ATGTCTTCTCAAGTTTCAAATTTTTCTGCGTCAGTGTTGAAGCCCAATGACATTCCTCATACTAAGCGTTCCATTGCAAATTTTCATCCAACTATTTGGAAGGACCATTTCCTTTCACTTACCTTTGACGATGCATTGAAGGTAGATGATGAAATGAAAGAAGGATCAGTTGAAAAGTTGAAAGAAGAAATAAGGATGATGGTGGTTGCTTCTGAGGGAAATCCAATGGAGAAGCTAAAGTTGGTTGATTCAATCCAACGGCTGGGTGTATCTTATCATTTTGAAAATGAGATTGACAAAGTTTTAGAACATATATATATGTCTTATTCCATTTTATTCACTAAAGATAGTGGTGAAGATCTTCATACTACTGCTCTTCTATTTCGACTTCTCAGGCAACAAGGTTATAAGATTTCATGCGATATATTCTCAAAGTTGATGGAAAAGAATGGAAAATTTAAAGAATCATTGGGTGAGGATGAAAGAGGAATTTTGAGCCTATATGAAGCATCACATATGAGGGGACATGGAGAAGATGTGCTTGAGGAAGCTCTTGAATTTACTACCAAACATCTTAAAACATATATTGAGTACTCAAATAATCCTCATTTTGCAGCTGAAGTTAGGAATGCCTTGAAATTGCCTATTAGAAAAGGTGTTCCAAGAATCAAGACAAGACAGTATTTGGCAATATACCAACAACATCCTTCACACAATGAGACTTTGCTTAAATTTTCAAAACTAGACTTCAACATATTACAAAGACTTCACCAGAAAGAGTTAAGTGAAATCTGCAGGTGGTGGAAGGATTTGAACGTCCCAATGAACTTTCCATTTGCGAGGGATAGAATTGTGGAGTGTTACTTTTGGACATTGGGTGTGTATTTTGAACCTCATTTCAAGATTGGGAGGAAAATAGTTACTAAAGTGATCGCAATGACCTCAATTTTGGATGATATATATGATGCTTATGGAACATTTGAAGAACTCCAAATTTTCACTCTAGCAATCAAAAGATGGGACATAAGCATGATTAATCTACTCCCGGAGTATATGAAAGTTTATTATATAGCTTTGCTTGATCTTTTCGAAGAGATTGATAAAGAGATAGTGAAGGATGGAACATCATATCGCGCTCACTTTGCAAAGGAAGCAATGAAAAGGCAAGCTGAATCCTATTTCAAAGAAGCTGAATGGCTAAACAAAAAATATAAACCAAAATTTGAAGAATACATGGAAGTGGCTTTAGTTAGCTCAGGTTATGCACTACTTGCAACTATTTCATTTGTTTGCATGGGTGACATTGCAACAAAGGAGGTATTTGATTGGCTTTCAGACTGTCCTAACATTCTTGAAGCCTCAACCATCATTTCTAGACTCATGGACGATGTTGTCTCCTACAAG 1404 35.97 MSSQVSNFSASVLKPNDIPHTKRSIANFHPTIWKDHFLSLTFDDALKVDDEMKEGSVEKLKEEIRMMVVASEGNPMEKLKLVDSIQRLGVSYHFENEIDKVLEHIYMSYSILFTKDSGEDLHTTALLFRLLRQQGYKISCDIFSKLMEKNGKFKESLGEDERGILSLYEASHMRGHGEDVLEEALEFTTKHLKTYIEYSNNPHFAAEVRNALKLPIRKGVPRIKTRQYLAIYQQHPSHNETLLKFSKLDFNILQRLHQKELSEICRWWKDLNVPMNFPFARDRIVECYFWTLGVYFEPHFKIGRKIVTKVIAMTSILDDIYDAYGTFEELQIFTLAIKRWDISMINLLPEYMKVYYIALLDLFEEIDKEIVKDGTSYRAHFAKEAMKRQAESYFKEAEWLNKKYKPKFEEYMEVALVSSGYALLATISFVCMGDIATKEVFDWLSDCPNILEASTIISRLMDDVVSYK 468
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 8800940 8805371 + CrPI670011_10g008210.1 Cre10g0821 510123

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre10g0821 468 SFLD Terpene Cyclase Like 1 C Terminal Domain 238 467 IPR034741 -
Cre10g0821 468 Gene3D - 73 238 IPR036965 GO:0010333(InterPro)|GO:0016829(InterPro)
Cre10g0821 468 FunFam Isoprene synthase, chloroplastic 73 238 - -
Cre10g0821 468 Pfam Terpene synthase family, metal binding domain 269 468 IPR005630 GO:0000287(InterPro)|GO:0010333(InterPro)|GO:0016829(InterPro)
Cre10g0821 468 CDD Terpene_cyclase_plant_C1 23 468 IPR044814 GO:0010333(InterPro)|GO:0016102(InterPro)
Cre10g0821 468 PANTHER OS04G0344100 PROTEIN-RELATED 27 467 - -
Cre10g0821 468 FunFam Isoprene synthase, chloroplastic 206 468 - -
Cre10g0821 468 Pfam Terpene synthase, N-terminal domain 32 212 IPR001906 GO:0010333(InterPro)|GO:0016829(InterPro)
Cre10g0821 468 SFLD Isoprenoid Synthase Type I 238 467 - -
Cre10g0821 468 SUPERFAMILY Terpenoid synthases 238 468 IPR008949 -
Cre10g0821 468 SUPERFAMILY Terpenoid cyclases/Protein prenyltransferases 29 238 IPR008930 -
Cre10g0821 468 Gene3D Farnesyl Diphosphate Synthase 30 468 IPR008949 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre10g0821 K15803 - - csv:101211697 738.028
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g0428 Cre-Chr2:1448440 Cre10g0821 Cre-Chr10:8800940 2.30E-81 dispersed
Cre02g0429 Cre-Chr2:1458758 Cre10g0821 Cre-Chr10:8800940 1.10E-80 dispersed
Cre03g0815 Cre-Chr3:6868014 Cre10g0821 Cre-Chr10:8800940 1.20E-62 dispersed
Cre03g0816 Cre-Chr3:6901182 Cre10g0821 Cre-Chr10:8800940 6.80E-59 dispersed
Cre10g0609 Cre-Chr10:5628195 Cre10g0821 Cre-Chr10:8800940 8.20E-114 dispersed
Cre10g0614 Cre-Chr10:5677359 Cre10g0821 Cre-Chr10:8800940 1.60E-27 dispersed
Cre10g0615 Cre-Chr10:5686181 Cre10g0821 Cre-Chr10:8800940 2.50E-85 dispersed
Cre10g0818 Cre-Chr10:8695081 Cre10g0821 Cre-Chr10:8800940 3.10E-84 dispersed
Cre10g0819 Cre-Chr10:8763118 Cre10g0821 Cre-Chr10:8800940 1.50E-138 dispersed
Cre10g0821 Cre-Chr10:8800940 Cre10g0823 Cre-Chr10:8835213 3.90E-89 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g397 Blo03g00606 . . . . . . Bma13g00965 . . . . . . . . . . . . . . . . Cla10g00588 Cam10g0575 Cec10g0606 Cco10g0582 Clacu10g0607 Cmu10g1420 Cre10g0821 . . . . . Csa03g00576 . Cme06g02687 . . . . . . . . . . . . Cma16g00825 . . Cpe14g00717 . Bhi11g00694 Tan01g1630 . . Hepe07g1116 . . . . . . . . . Lsi05g00661 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000035 13 6 8 10 4 9 1 10 10 12 7 10 13 12 18 10 8 8 4 9 11 10 7 16 20 21 5 29 24 12 337