Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre10g0827 ATGCCAACAGTTTGGTTGTCATTGAAGAAATCTTTGCACTGTAAGTCAGAGCCATCAGAAGTTCATGACCCAAAAAGTAGGAAGAATTTAGGAGCTATTTTGACAAGAAAAACAGGGGGCGGAGGAGGAGGAAGATCAGGTTGTTCAAGGTCCATAGCAAATCTCAAAGATGTCATCCATGGCGGCAGCAAAAGGCATTTGGATAAGCCTCCAAGTTGCAGTCCAAGATCCATTGGCAGCAGTGAGTTTCTTAACCCAATAACCCACGAAGTCATTCTCAGCAACTCAAGATGTGAGCTCAAAATCACCGGTTTTCATGGTGGTTTCCCCCAAGATCTTCCTGCCGCCGATCCTCACGGCGGCGCTAACGGCGCTTCCACCTTTGTTGGTACTCTCACACCGGGCACGCCCGGCCCCGGTGGCCACCCTTCAATGCATTACTTCAATCCTTCCTTGAGGTCTTCGAAAAGACTCCCTTTCAGAGAGGGATTTGGTAGCTCTAATAAATCTGGCGGCGGAGGAGCCCGCGGCGGAGTACATTCGAGCAATAGAATCTCTTTGGAAACAGAGAATAGTAGGAATGGATCTTCTGCTGCGGTTACTTGCCATAAATGTGGAGAGCAGTTCAATAAATGGGATGCTGCTGAAGCACATCATCTTTCTAAACATGCTGTGACGGAGCTTGTGGAAGGAGATTCATCAAGGAAAATAGTGGAGATAATTTGCAGGACAAGCTGGTTAAAGTCAGAGAATCAAAGTGGCAGAATAGAAAGAGTCCTAAAAGTTCACAATATGCAACGCACGCTAGCTCGATTCGAGGAGTATCGCGAGACGGTTAAGATCAAAGCCAGCAAGCTTCCAAAGAAGCACCCTCGGTGCCTTGCAGACGGGAACGAGCTCCTGCGATTCTACGGGACGACAGTGGCATGCTCGCTGGGTGTAAACGGCTCCTCCAGCCTATGCATATCAGAGAAATGCTGCGTTTGTAGGATCATACGTAACGGGTTCTCGGCAAAGACAGAGATGAAAGAAGGGATAGGCGTATTCACAACTTCGACGAGTGCGAGAGCATTCAACTCCATCGAGGCAGCAGGAGGGGACGAGACGATGAGGAGGAAAGCGATGATCGTTTGTAGGGTGATTGCAGGGAGAGTTCATAGGCCATTGGAGAACATACAAGAAATGGCTGGGCAGACAGGGTTTGATTCATTGGCAGGGAAAGTTGGGTTGCATTCTAATATAGAAGAGCTTTATTTGCTGAATCCTAGAGCTTTGCTTCCATGTTTTGTGGTAATTTGCAAACCATGA 1308 47.94 MPTVWLSLKKSLHCKSEPSEVHDPKSRKNLGAILTRKTGGGGGGRSGCSRSIANLKDVIHGGSKRHLDKPPSCSPRSIGSSEFLNPITHEVILSNSRCELKITGFHGGFPQDLPAADPHGGANGASTFVGTLTPGTPGPGGHPSMHYFNPSLRSSKRLPFREGFGSSNKSGGGGARGGVHSSNRISLETENSRNGSSAAVTCHKCGEQFNKWDAAEAHHLSKHAVTELVEGDSSRKIVEIICRTSWLKSENQSGRIERVLKVHNMQRTLARFEEYRETVKIKASKLPKKHPRCLADGNELLRFYGTTVACSLGVNGSSSLCISEKCCVCRIIRNGFSAKTEMKEGIGVFTTSTSARAFNSIEAAGGDETMRRKAMIVCRVIAGRVHRPLENIQEMAGQTGFDSLAGKVGLHSNIEELYLLNPRALLPCFVVICKP 435
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 8926570 8928197 - CrPI670011_10g008270.1 Cre10g0827 510129
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre10g0827 435 MobiDBLite consensus disorder prediction 161 181 - -
Cre10g0827 435 ProSitePatterns Zinc finger C2H2 type domain signature. 202 223 IPR013087 -
Cre10g0827 435 Gene3D - 225 434 - -
Cre10g0827 435 SUPERFAMILY ADP-ribosylation 225 434 - -
Cre10g0827 435 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 3 434 - -
Cre10g0827 435 FunFam C2H2-like zinc finger protein 224 434 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre04g1852 Cre-Chr4:36217830 Cre10g0827 Cre-Chr10:8926570 3.90E-65 dispersed
Cre02g2273 Cre-Chr2:36324571 Cre10g0827 Cre-Chr10:8926570 1.50E-46 transposed
Cre05g2002 Cre-Chr5:32052705 Cre10g0827 Cre-Chr10:8926570 1.20E-52 transposed
Cre09g2135 Cre-Chr9:40333348 Cre10g0827 Cre-Chr10:8926570 6.10E-24 transposed
Cre10g0827 Cre-Chr10:8926570 Cre05g1652 Cre-Chr5:27364797 2.20E-166 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54504 None None None None Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre10g0827 - - - 0.0