Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre10g0839 ATGGCCACCACCTCCGACACATCCGACCATGAACAATTAGAAGAAGAAGAATCAGAAGAAGAGCCGTCCAATGGTGGGTTCTGCCGGAGCCTATACGGAGTCGGCTCAGTTCTTGACCCGACAACCAAATGGGTCCGAGAATGGAACCGTGTCTTCCTCCTCGTCTGCGCGGCGGGGCTGTTCGTCGACCCTCTCTTTCTCTACACGCTATCGATAAGCGAGTCGTGGACGTGCGTCTTTATCGATGGGTGGTTGGCCATCACCGTCACCGTCCTCCGCTGCATGGCCGACGCTTTGCACCTTTGGAACATCTGGCTCCAGCTCAAGACTGCCACAAGGTCCTCCTTTTCCGGTAGCAGCGGCGGTGATGCGACGGCCGAAAATAGAGGCCTTAGAGATACCACCCCACGCGCCGTCGCTCTCCGGTATTTCAAGTCCAAGAAAGGCTTCTTCTTTGATCTCTTTGTTATTCTTCCCATTCCTCAGGTTGTATTATGGGTTGTAATTCCTAGAATAATGAAAGAAGGAAGAGTGACATTGGTGATGACAGTATTATTAATAGTATTTTTGTTTCAATATTTGCCAAAATTGTACCATTCCGTTTGCTTGTTGCGGCGCCTCCAAAACCTATCTGGCTACATCTTCGGCACTGTTTGGTGGGGCATTGCCCTCAATCTCATTGCTTACTTTGTTGCTGCCCATGCTGCAGGAGCATGTTGGTATCTATTGGGGGTACAAAGAGCAGCAAAATGCTTAAAAGAGCAATGCAGAGCAAGAAGCAACAGCTGTGGGGTTAGATTGCTATCATGCAAAGACCCAATTTTCTATGGAGCAAATAATATGGGAATAGGGAGAGACAGAGGGAGATTTGATTGGGCAAACAACAGGCAAATAAAGTTCATGTGTTTGGATACTTCTGATAACTATGATTATGGAGCTTACAAATGGACTGTTCAGCTTGTTATCAATCAAAGTCGCTTGGAGAAGATCCTTTTTCCCATCTTTTGGGGCCTCATGACTCTTAGTACCTTTGGGAACTTGGAAAGCACCACTGAATGGCTGGAAGTAGTGTTCAATATCATTGTTCTCACCAGTGGACTCCTATTGGTCACCATGTTGATTGGAAATATCAAGGTGTTTCTGCATGCAACAACGTCAAAGAAGCAAGCAATGCAGCTGAAGATGAGGAACCTAGAGTGGTGGATGAGGAAGCGACGGCTGCCACAAGGATTCCGGCAGCGTGTGCGAAACTACGAGCGGCAGCGGTGGGCAGCGATGCGAGGTGTGGACGAGTGTGAGATGATAAAAAACCTACCGGAAGGGCTGCGGCGAGACATAAAGTATCACCTTTGCTTGGATTTGGTTAGGCAGGTGCCATTGTTTCAACATATGGATGATCTTGTTCTTGAGAACATTTGTGATCGTGTCAAGTCCCTCATCTTCACCAAGGGCGAAACTATAACAAGAGAAGGAGATCCAGTACAAAGAATGCTATTCGTTGTGAGAGGGCATCTCCAAAGCAGCCAAGTGTTACGCGACGGCGTAAAAAGTTGTTGCATGTTAGGCCCAGGCAACTTCAGTGGCGACGAGCTTCTATCCTGGTGCCTCCGCCGCCCCTTCATAGAGCGCCTTCCCCCCTCCTCCTGCACTCTCGTCACACTCGAGACCACCGAGGCCTTCGGCTTGGAGGCTGACGACGTCAAGTACGTAACCCAGCACTTCCGCTACACTTTCGTCAACGACAAGGTCAAGCGCAGCGCCCGCTACTACTCCCCCGGCTGGCGCACTTGGGCAGCCGTCGCCATCCAGCTCGCCTGGCGCCGTTATCGCCACCGTCTCACACTCACGTCTTTGTCCTTTATTCGGCCCCGCCGCCCGCTCTCACGCTGCTCTTCCTTAGGGGAGGATCGCCTCCGCCTCTATACGGCATTGCTTACTTCTCCTAAGCCCAATCAGGACCATTTTGATTTTTGA 1974 50.35 MATTSDTSDHEQLEEEESEEEPSNGGFCRSLYGVGSVLDPTTKWVREWNRVFLLVCAAGLFVDPLFLYTLSISESWTCVFIDGWLAITVTVLRCMADALHLWNIWLQLKTATRSSFSGSSGGDATAENRGLRDTTPRAVALRYFKSKKGFFFDLFVILPIPQVVLWVVIPRIMKEGRVTLVMTVLLIVFLFQYLPKLYHSVCLLRRLQNLSGYIFGTVWWGIALNLIAYFVAAHAAGACWYLLGVQRAAKCLKEQCRARSNSCGVRLLSCKDPIFYGANNMGIGRDRGRFDWANNRQIKFMCLDTSDNYDYGAYKWTVQLVINQSRLEKILFPIFWGLMTLSTFGNLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMQLKMRNLEWWMRKRRLPQGFRQRVRNYERQRWAAMRGVDECEMIKNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGETITREGDPVQRMLFVVRGHLQSSQVLRDGVKSCCMLGPGNFSGDELLSWCLRRPFIERLPPSSCTLVTLETTEAFGLEADDVKYVTQHFRYTFVNDKVKRSARYYSPGWRTWAAVAIQLAWRRYRHRLTLTSLSFIRPRRPLSRCSSLGEDRLRLYTALLTSPKPNQDHFDF 657
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 9147254 9153487 - CrPI670011_10g008390.1 Cre10g0839 510141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre10g0839 657 Gene3D Jelly Rolls 458 576 IPR014710 -
Cre10g0839 657 MobiDBLite consensus disorder prediction 1 26 - -
Cre10g0839 657 SMART cnmp_10 460 589 IPR000595 -
Cre10g0839 657 FunFam cyclic nucleotide-gated ion channel 4 458 576 - -
Cre10g0839 657 Pfam Cyclic nucleotide-binding domain 481 570 IPR000595 -
Cre10g0839 657 FunFam Cyclic nucleotide-gated ion channel 1 387 451 - -
Cre10g0839 657 SUPERFAMILY cAMP-binding domain-like 386 574 IPR018490 -
Cre10g0839 657 SUPERFAMILY Voltage-gated potassium channels 40 381 - -
Cre10g0839 657 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 35 614 - -
Cre10g0839 657 ProSiteProfiles cAMP/cGMP binding motif profile. 460 539 IPR000595 -
Cre10g0839 657 CDD CAP_ED 460 566 IPR000595 -
Cre10g0839 657 Gene3D Helix hairpin bin 385 451 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre10g0839 Cre-Chr10:9147254 Cre11g0950 Cre-Chr11:6809920 2.00E-184 dispersed
Cre10g0839 Cre-Chr10:9147254 Cre10g1579 Cre-Chr10:29826647 1.20E-96 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre10g0839 K05391 - csv:101207531 1227.62