Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre10g0872 ATGGCGGCGGCTTCAGCGATTTTCAAAATCTTCAGTAGGTCATCTTCAGGCTGCACTAGAACAGCAAGAACAGAGACAGATGCATTTTATTTTGTGGTGTTGAGATTATACAGCGCAAGACGAAGCTGCGATCGAAGAAACCTCTTTGCGAGGATTAGTCCTCTTGGTGACCCTGAGCTTAGTGTAGTGCCGGTTCTTAATCAATGGATTGAGGAAGGCAGGAAGATCGAGGATTTTGAGCTCCGGAGAATCGTTCGCGACCTTCGTACTTCCCGGCGGTATGGGCAAGCCCTTGAGGTGTCTGAATGGATGTGTAGCAAGGGACTTTTTTCCCTCACAACAAGAGACTTTGCCGTGCAGCTTGATTTGATTGGCCGAGTTCGTGGGTTGGATTCTGCAGAGAAGTATTTTGGCAGTGTTTCTAACCAAGAGGAAATTGGTAAACTCTATGGTGCTCTTCTAAATTGTTATGTCAGGGAAGGCCTTGTAGATAAGTCCCTTGCTCATATGCAGAAGATGAAGGAGATGGGTTTTGCTTCCTCTCCCCTCTGCTACAATGATATAATGTGTCTATATTTGAAAACTGGCCAGGCTGATAAGGTTCCAAATGTACTGTCTGAAATGAAGGAGAATGGTGTTCTTCCTGACAATTTTAGCTATAGAATTTGTATCAGTTCTTATGGAGCTAAGTCTGATGTAATCAGTATGGAAAAGGTCTTGAAAGAAATGGAGAGTCAAACTCACATATCCATGGATTGGACTACTTATTCAATGGTTGCCAGTTTTTTCATCAAAGCCGGTATGCATGAGAAAGCAATTAGTTATCTTCGGAAATGTGAGGACAAGGTCGATCAAGACGCACTTGGCTTCAATCATCTCATTTCACACTACACCAGTTTGGGACACAAGGATGAAGTAATGAGATTGTGGGCTCTTCAGAAGAAGTGTAAGAAGCAAGTCAACAGGGATTATATAACCATGTTGAGTTCTTTTGTAAAGCTGGAGATGCTCGAGGAAGCTGAGAATCTTCTCGTGGAATGGGAGTCATCTTGCGAATGTTATGATTTTCGAGTTCCCAACGTCGTTCTTATCGGGTATTCGCAAAAGGGGTTAATTGAGAGAGCTGAAAAGATGCTTCGAAACATCATCAAAGATGGGAGGATCCCATCACCAAATAGTTGGGGCATTATTGCAGCTGGGTACTTGGAAAAGCAGAACCTGGAGAAAGCTTTTCAGAGCATGAAAGAAGCTCTTGCTGTGAAAGAGCAAAATAAAGGGTGGAGGCCCAAACCTAGCGTTTTCTCAAGCATACTGCGATGGCTATCTGAAAATGGAAGATATGAAGAGCTGAAAGAGTTTTTGAGCTCATTGAAGACTGTACCTTCCATGGATGGAAAACTAAATAATGCCTTGGATGAGCTTCTGAAAACCTTGAAAAATGAGGATGGAATAACGACGATGGGCGAATTAGAGATGAGGTGA 1482 43.05 MAAASAIFKIFSRSSSGCTRTARTETDAFYFVVLRLYSARRSCDRRNLFARISPLGDPELSVVPVLNQWIEEGRKIEDFELRRIVRDLRTSRRYGQALEVSEWMCSKGLFSLTTRDFAVQLDLIGRVRGLDSAEKYFGSVSNQEEIGKLYGALLNCYVREGLVDKSLAHMQKMKEMGFASSPLCYNDIMCLYLKTGQADKVPNVLSEMKENGVLPDNFSYRICISSYGAKSDVISMEKVLKEMESQTHISMDWTTYSMVASFFIKAGMHEKAISYLRKCEDKVDQDALGFNHLISHYTSLGHKDEVMRLWALQKKCKKQVNRDYITMLSSFVKLEMLEEAENLLVEWESSCECYDFRVPNVVLIGYSQKGLIERAEKMLRNIIKDGRIPSPNSWGIIAAGYLEKQNLEKAFQSMKEALAVKEQNKGWRPKPSVFSSILRWLSENGRYEELKEFLSSLKTVPSMDGKLNNALDELLKTLKNEDGITTMGELEMR 493
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 9889605 9891561 - CrPI670011_10g008720.1 Cre10g0872 510174

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre10g0872 493 NCBIfam pentatricopeptide repeat 149 178 IPR002885 -
Cre10g0872 493 NCBIfam pentatricopeptide repeat 184 216 IPR002885 -
Cre10g0872 493 Coils Coil 404 424 - -
Cre10g0872 493 Pfam PPR repeat 360 386 IPR002885 -
Cre10g0872 493 Pfam PPR repeat 255 279 IPR002885 -
Cre10g0872 493 Pfam PPR repeat 150 178 IPR002885 -
Cre10g0872 493 Pfam PPR repeat 324 349 IPR002885 -
Cre10g0872 493 PANTHER OS12G0527900 PROTEIN 23 465 - GO:0005739(PANTHER)
Cre10g0872 493 SUPERFAMILY TPR-like 135 336 IPR011990 GO:0005515(InterPro)
Cre10g0872 493 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 181 215 IPR002885 -
Cre10g0872 493 ProSiteProfiles TPR repeat profile. 391 424 IPR019734 GO:0005515(InterPro)
Cre10g0872 493 SUPERFAMILY TPR-like 260 425 IPR011990 GO:0005515(InterPro)
Cre10g0872 493 Gene3D Tetratricopeptide repeat domain 78 251 IPR011990 GO:0005515(InterPro)
Cre10g0872 493 Gene3D Tetratricopeptide repeat domain 321 486 IPR011990 GO:0005515(InterPro)
Cre10g0872 493 Pfam PPR repeat family 184 227 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre10g0872 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre07g0653 Cre-Chr7:4284304 Cre10g0872 Cre-Chr10:9889605 6.20E-72 dispersed
Cre07g0654 Cre-Chr7:4288929 Cre10g0872 Cre-Chr10:9889605 1.50E-36 dispersed
Cre07g0655 Cre-Chr7:4289939 Cre10g0872 Cre-Chr10:9889605 6.40E-14 dispersed
Cre09g1611 Cre-Chr9:32920008 Cre10g0872 Cre-Chr10:9889605 3.80E-32 dispersed
Cre10g0872 Cre-Chr10:9889605 Cre10g1927 Cre-Chr10:33911478 7.50E-06 dispersed
Cre10g0872 Cre-Chr10:9889605 Cre03g0889 Cre-Chr3:7642544 1.60E-109 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g243 Blo03g00650 . Bda07g00292 . . . . . . Cmo04g00975 . . . . . . . . . . . . . . Cla10g00644 Cam10g0640 Cec10g0662 Cco10g0637 Clacu10g0663 Cmu10g1490 Cre10g0872 . . . Cone15ag1062 . Csa03g00624 . . . . . . . Bpe01g00425 . Bma14g00231 . . . Cma04g00908 . Car04g00851 . . . . . . . . . . . . . . . . . Lsi05g00713 . Chy06g01702 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002224 2 4 2 2 2 2 2 2 2 2 1 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 3 2 2 62