Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre10g0888 ATGTACAGAGGGCAGTACAATCCTGAACTTCCTGGGTTCTCTTCTTCCCACAGTTTGGTCAGTGATTTCCATGTTTTGCTTGCTCTCAAACAAGGGTTTGAATTCTCCGACTCTGCTGCACTAAGCACTTGGACTGCCTCAAACTTCAGCTCAGTTTGTTCATGGGTTGGGATTCAGTGCTCTGACGGACGAGTTGTGTCGGTCAACTTGACAGATTTGAGTCTTGGTGGCTATGTTTCACCGTTGATTTCAAGTCTTGACCAACTTACTGAGCTGTCTGTCGCAGGAAATAACTTCTCTGGTGGCATTGAAGTAGTGAATTTGAGTTATCTTCGATTCCTTAACATCTCAAACAACCAGTTCACTGGGACTCTGCACTGGAACTTTTCGAGCCTGCCGAACTTGGAGGTGTTGGATGCCTATAACAACAACTTCAGTGCTCTTCTCCCCACTGAGATTGTGAATTTACAGAACCTCAAATACTTGGACCTTGGAGGTAACTTTTTCCATGGAAAAATCCCTGAAAGCTATGGCAGTTTAGAAGGGTTGCAATATTTTTCTATTGGAGGAAATGATTTGGTTGGGAAAATCCCAGGAACGTTGGGAAATCTCACAAATTTGAGAGAAATTCACTTGGGCTATTACAATGTTTTCGAAGGGGGGATTCCACCTGAGCTAGGGAAGTTGACCAATTTGGTTATCATGGAGATTGCAGACTGCAGTTTGGATGGGGAAATTCCTCATGAACTTGGAAATTTGAAGGCCTTGAACACTCTATATTTGCATACAAATCTACTCTCAGGTTCGATTCCAAAGCAGTTAGGCAATCTGACAAACTTGGTCAATCTGGATCTCTCCAACAATGCACTCACAGGAGAAATCCCATCTGAGTTTGTTGAGCTCAAACAGCTCAACCTGTACAACCTCTTCATGAACAAGCTGCACGGATCTATTCCAGACTACATAGCAGATTTGCCGAACTTGGAGACCTTGGACCTGTGGATGAACAACTTTACCGGCACAATCCCGAAGAATCTTGGCCAAAATGGGAGGCTTCAGCTCCTTGATTTGTCGACAAACAAGCTCACGGGTACAATACCTGAGGGTTTGTGTTCATCAAACCAGCTGAAAATACTGATTCTGATGAACAACTTCCTGTTTGGGCCAATCCCTGAAGGTCTGGGGACATGTACCAGTCTTACAAAAGTGAGGTTGGGGCAGAACTATCTGAATGGAAGCATTCCCAATGGCTTCATTTACTTGCCTCAGCTAAATTTAGCAGAGTTTCAGGACAATTACCTTTCAGGTACACTTTCAGAAAATAGGGAGAGTTCATCAATACCCATCAAATTAGGGCAACTTAATCTCTCTAACAATCTTCTCTCAGGAACTTTACCATCTTCACTTTCTAATTTGTCTTCTCTGCAAATTCTCCTCCTCAATGGCAACCAGTTTTCTGGTACAATCCCTCCTTCCATTGGAGAACTCAATCAACTTCTAAAGCTTGATCTCAGCAGAAACTCACTTTCGGGTGAAATTCCACCTGAAATTGGTTATTGTATCCATCTCACTTACCTTGATTTGAGCAGGAACAACCTTTCTGGCCCAATTCCCCCTGAAATTTCCAATGCACATATTCTCAATTACCTCAACTTGTCGAGAAATCACCTAAATCAATCCCTACCGAAATCAATAGGGACAATGAAGAGCCTGACGATTGCTGATTTCTCCTTCAACGATTTCTCGGGGAAGTTACCGGAATCAGGACAGCTTACCTTCTTCAATGCTTCATCCTTCGCCGGAAATCCCCAACTTTGCGGCTCTCTCCTCAACAATCCCTGCAACTTCGCAACAACAACAACAAAACCGGGAAAAACGCCGACGTATTTCAAGCTAATCTTCGCCCTCGGCCTATTGATTTGCTCTCTAGTGTTCGCCATAGCGGCAGTAGTCAAAGCGAAATCATTCAAAAGAAACGGATCAAGTTCATGGAAAATGACCTCATTCCAAAAGCTTGAATTCACCGTCTACGACGTCTTGGAGTGCGTGAAAGACGGCAACGTTATCGGAAGAGGCGGCGCCGGCATCGTCTACCACGGGAAAATGCCGAACGGAGTTGAAATCGCAGTGAAGAAACTCCTAGGGTTCGGCCCTAACAGCCACGACCATGGATTCCGAGCCGAAATCCAAACCTTAGGCAACATTCGACACCGAAACATCGTCAGATTACTCGCATTCTGCTCCAATAAAGAGACAAACCTCCTCGTATATGAATACATGAGGAATGGAAGTTTAGGCGAAGCACTCCACGGCAAAAAAGCCTCGTTCCTCGGATGGAATTTGAGATACAAAATCGCCATTGAAGCCGCCAAAGGTCTCTGCTACCTCCACCACGATTGCTCTCCACTAATCGTCCATCGAGACGTGAAATCGAACAACATTCTCTTGAATTCGAACTTCGAAGCTCATGTCGCCGATTTCGGATTGGCGAAGTTCATGTTCGACGGCGGCGCGTCGGAATGCATGTCGGTGATCGCCGGATCTTACGGCTACATCGCTCCTGAATATGCATACACATTGAGAGTTGACGAGAAAAGTGATGTGTATAGTTTTGGAGTTGTGCTATTAGAGCTTTTAACGGGGCGACGACCCGTTGGAGATTTTGGAGACGGAGTGGTTGATATAGCACAATGGTGCAAAAAAGCTCTAAGAGATGGTGAGAATGAAAACGACATTCTTTGCATAGTTGACAAAAGAGTAGGAATGGTGCCCAAAGAGGAAGCAAAACATTTATTCTTCATAGCAATGTTATGTGTGCAAGAGAATAGCGTGGAAAGACCAACAATGAGAGAAGTTGTTCAAATGTTGGCTGAATTTCCTCACCAGTCTCCCAACTGTTACCAATCTTCCTCTTCTTCTTCTCCCTGTCAAAAATTGAAGAATGGTGAAAAGGAAAGAAAACATCAGTCAAAGTCCAAATTAGATCTTTTAGTATAA 2997 44.14 MYRGQYNPELPGFSSSHSLVSDFHVLLALKQGFEFSDSAALSTWTASNFSSVCSWVGIQCSDGRVVSVNLTDLSLGGYVSPLISSLDQLTELSVAGNNFSGGIEVVNLSYLRFLNISNNQFTGTLHWNFSSLPNLEVLDAYNNNFSALLPTEIVNLQNLKYLDLGGNFFHGKIPESYGSLEGLQYFSIGGNDLVGKIPGTLGNLTNLREIHLGYYNVFEGGIPPELGKLTNLVIMEIADCSLDGEIPHELGNLKALNTLYLHTNLLSGSIPKQLGNLTNLVNLDLSNNALTGEIPSEFVELKQLNLYNLFMNKLHGSIPDYIADLPNLETLDLWMNNFTGTIPKNLGQNGRLQLLDLSTNKLTGTIPEGLCSSNQLKILILMNNFLFGPIPEGLGTCTSLTKVRLGQNYLNGSIPNGFIYLPQLNLAEFQDNYLSGTLSENRESSSIPIKLGQLNLSNNLLSGTLPSSLSNLSSLQILLLNGNQFSGTIPPSIGELNQLLKLDLSRNSLSGEIPPEIGYCIHLTYLDLSRNNLSGPIPPEISNAHILNYLNLSRNHLNQSLPKSIGTMKSLTIADFSFNDFSGKLPESGQLTFFNASSFAGNPQLCGSLLNNPCNFATTTTKPGKTPTYFKLIFALGLLICSLVFAIAAVVKAKSFKRNGSSSWKMTSFQKLEFTVYDVLECVKDGNVIGRGGAGIVYHGKMPNGVEIAVKKLLGFGPNSHDHGFRAEIQTLGNIRHRNIVRLLAFCSNKETNLLVYEYMRNGSLGEALHGKKASFLGWNLRYKIAIEAAKGLCYLHHDCSPLIVHRDVKSNNILLNSNFEAHVADFGLAKFMFDGGASECMSVIAGSYGYIAPEYAYTLRVDEKSDVYSFGVVLLELLTGRRPVGDFGDGVVDIAQWCKKALRDGENENDILCIVDKRVGMVPKEEAKHLFFIAMLCVQENSVERPTMREVVQMLAEFPHQSPNCYQSSSSSSPCQKLKNGEKERKHQSKSKLDLLV 998
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 10211140 10216268 - CrPI670011_10g008880.1 Cre10g0888 510190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre10g0888 998 SUPERFAMILY Protein kinase-like (PK-like) 667 956 IPR011009 -
Cre10g0888 998 MobiDBLite consensus disorder prediction 964 978 - -
Cre10g0888 998 SUPERFAMILY L domain-like 350 607 - -
Cre10g0888 998 Gene3D Ribonuclease Inhibitor 195 329 IPR032675 -
Cre10g0888 998 Pfam Leucine rich repeat N-terminal domain 21 61 IPR013210 -
Cre10g0888 998 Gene3D Ribonuclease Inhibitor 20 177 IPR032675 -
Cre10g0888 998 Gene3D Transferase(Phosphotransferase) domain 1 760 979 - -
Cre10g0888 998 PRINTS Leucine-rich repeat signature 496 509 - -
Cre10g0888 998 PRINTS Leucine-rich repeat signature 352 365 - -
Cre10g0888 998 SMART serkin_6 683 956 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre10g0888 998 ProSitePatterns Serine/Threonine protein kinases active-site signature. 804 816 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre10g0888 998 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 19 958 IPR050647 -
Cre10g0888 998 MobiDBLite consensus disorder prediction 964 998 - -
Cre10g0888 998 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 329 618 - -
Cre10g0888 998 Gene3D Phosphorylase Kinase; domain 1 647 759 - -
Cre10g0888 998 SMART LRR_typ_2 472 494 IPR003591 -
Cre10g0888 998 SMART LRR_typ_2 325 349 IPR003591 -
Cre10g0888 998 SMART LRR_typ_2 132 155 IPR003591 -
Cre10g0888 998 SMART LRR_typ_2 521 544 IPR003591 -
Cre10g0888 998 SMART LRR_typ_2 277 301 IPR003591 -
Cre10g0888 998 SMART LRR_typ_2 496 520 IPR003591 -
Cre10g0888 998 SMART LRR_typ_2 350 373 IPR003591 -
Cre10g0888 998 SMART LRR_typ_2 156 180 IPR003591 -
Cre10g0888 998 Pfam Leucine Rich Repeat 522 543 IPR001611 GO:0005515(InterPro)
Cre10g0888 998 Pfam Leucine Rich Repeat 351 372 IPR001611 GO:0005515(InterPro)
Cre10g0888 998 Pfam Leucine Rich Repeat 134 156 IPR001611 GO:0005515(InterPro)
Cre10g0888 998 Pfam Leucine Rich Repeat 474 496 IPR001611 GO:0005515(InterPro)
Cre10g0888 998 Pfam Leucine Rich Repeat 327 348 IPR001611 GO:0005515(InterPro)
Cre10g0888 998 Pfam Leucine Rich Repeat 499 520 IPR001611 GO:0005515(InterPro)
Cre10g0888 998 Pfam Leucine Rich Repeat 158 180 IPR001611 GO:0005515(InterPro)
Cre10g0888 998 Pfam Leucine Rich Repeat 547 567 IPR001611 GO:0005515(InterPro)
Cre10g0888 998 Pfam Leucine Rich Repeat 111 132 IPR001611 GO:0005515(InterPro)
Cre10g0888 998 Pfam Leucine Rich Repeat 279 299 IPR001611 GO:0005515(InterPro)
Cre10g0888 998 Pfam Leucine Rich Repeat 451 472 IPR001611 GO:0005515(InterPro)
Cre10g0888 998 Gene3D Ribonuclease Inhibitor 330 617 IPR032675 -
Cre10g0888 998 MobiDBLite consensus disorder prediction 979 998 - -
Cre10g0888 998 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 652 759 - -
Cre10g0888 998 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase 760 973 - -
Cre10g0888 998 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 129 216 - -
Cre10g0888 998 SUPERFAMILY RNI-like 68 419 - -
Cre10g0888 998 ProSiteProfiles Protein kinase domain profile. 683 959 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre10g0888 998 Pfam Protein tyrosine and serine/threonine kinase 686 956 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre10g0888 998 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 217 322 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre03g1350 Cre-Chr3:24335625 Cre10g0888 Cre-Chr10:10211140 3.20E-08 dispersed
Cre09g0943 Cre-Chr9:9554339 Cre10g0888 Cre-Chr10:10211140 5.00E-79 dispersed
Cre10g0888 Cre-Chr10:10211140 Cre10g0980 Cre-Chr10:14300229 1.40E-139 dispersed
Cre10g0888 Cre-Chr10:10211140 Cre04g1420 Cre-Chr4:32992807 8.30E-97 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64456 PF07714 PK_Tyr_Ser-Thr 1.60E-43 CL0016 Cre PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre10g0888 - - - 0.0