Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cre10g0920 ATGAAGCCATGGGGTAATTTGGGCCTTTGGTTCACAGCCATGGCTGCCGTTTTCCTCTTCTTCTTCTGTCTCGACCACAATGGCTACCGGATTTCAACGTTCCCAGTAAGGAGATACCTAAGGGACATGGACATCAACAATTCTTCGACACTATTCAACGTCACACTACAAAGAAACGGTGGATATGTTATAATGGACAATGGCATTGTCCTAGTTACTCTTTCAACTCCAGATGGCGACGTCGTTGGATTGAGCTACAATGGAATCGACAACTTTCTCGAAACCAAAAACGAAGAGCAAAACAGAGGCTACTGGGACGCCGTATGGAACAACCCAGACGAACCCATTACCACGGACAGATTAAAAGGAGAGAGTTTTGAAGTAATAGTAACGAACGAGGAACAACTGGAAATATCGTTTAAGAAAACATGGAGTTTTGCAGTTGGGAACGAGACGGCCCCCGTAAATGTAGACAAAAGGTATGTATTGCTGAGAGGAAGCTCTGGGTTTTATAGTTATGCAATATTCGAGAGGCCCATTGGGTGGCCCCAGATTGAAATGGATCAAGTTAGGATTGTTTACAAGCTTCAAAGCAAAATGTTTGATTATATGGCTGTGTCGGACGATAGGCAAAGGGTGATGCCCACAATGAGAGACCGTGAAAATGGTGAGCCATTGGCTTATCCCGAGGCCGTTCTTTTGACTAATCCTACCAACGAAGAACTCAGAGGAGAGGTGGATGACAAGTACCAGTACTCAACAGAGGACAAGGACAACCAAGTTCACGGCTGGATCTGCAGCGATCCGCCGGTGGGATTCTGGATGATCACTCCCAGCGACGAGTTCCGGGTCGCCGGTCCTGTCAAGCAGGATCTCACCTCCCACGCCGGCCCCATCACTCTCTCCATGTTCGTTAGCACCCACTACGCTGGAAAGGACATTGGCATGAGATTTGCAGCTGGAGAGCCCTGGAAGAAGGTCTTCGGCCCTATCTTTGTCTATCTCAACTCTGTTTCCCCTGAAGAGGATTCTCTATCCCTCTGGCAAGATGCCAAACAACAGTTGGCAATAGAAATCAATGAGTGGCCCTACACTTTTCCTCAATCAGAAGACTTCCCTTCTTCTGCCCAAAGAGGGAGTGTCACTGGCCGGTTATTAGTCCGTGATGGGTACATCAGTACCAAACTTATGCGGGCGAGTAATGCTTTCGTTGGATTGGCATTGCCTGGTCCTGTGGGATCTTGGCAAACGGAAACCAAGGGCTATCAGTTCTGGACTCGAGCTGACAATCACGGCAACTTCTTAATCAATAACATCCGAGCTGGGGTTTACAATCTGTATGCTTTTGTCCCTGGCTTCATTGGAGACTACAAATACGAAGCAAATATTACAATTGAGCTCGGGTCTGAAATCAGATTGGATGTGATGGTGTTTGATCTGCCGAGACAAGGCCCAACCATCTGGGAGATTGGCATTCCCGATCGCACTGCAGCGGAGTTTTATGTGCCCGACCCTTATCCGACTCTCATGAATAAACTGTACAACAACCAAGCTGACAAGTTCAGACAATATGGCTTGTGGGAACGTTATGCGGCTATGTATCCAAATAATGATCTTGTGTTTACCGTCGGTGTTGACGATTATACAAAGGACTGGTTCTATGCTCATGTTAACAGGAATGTGGGGAATCAAACATACCAAGCGACCACTTGGGAGATCAGATTTTTATTGCAATCTGTGAACCAAACGGCAAATTACACACTGCAAATTGCATTAGCATCTGCTGCTGAATGCGAATTACAGGTTCGATTAAACGATCGAGAATCAGAGCAGGCTGCTTTCTCGACAGGGAAGATCGGAAAGGACAATGCGATCGCAAGGCATGGCATACATGGACTTTACTGGTTATACTCCATACCTCTCCCTGGTGATCAATTTCTACAAGGGAACAACTCCATCTATCTCACTCAGGCAAGAAACGAAAGCCCTTTCGAAGGTCTCATGTACGACTACATTCGACTTGAAGCTCCACCTCTAACATAA 2043 46.65 MKPWGNLGLWFTAMAAVFLFFFCLDHNGYRISTFPVRRYLRDMDINNSSTLFNVTLQRNGGYVIMDNGIVLVTLSTPDGDVVGLSYNGIDNFLETKNEEQNRGYWDAVWNNPDEPITTDRLKGESFEVIVTNEEQLEISFKKTWSFAVGNETAPVNVDKRYVLLRGSSGFYSYAIFERPIGWPQIEMDQVRIVYKLQSKMFDYMAVSDDRQRVMPTMRDRENGEPLAYPEAVLLTNPTNEELRGEVDDKYQYSTEDKDNQVHGWICSDPPVGFWMITPSDEFRVAGPVKQDLTSHAGPITLSMFVSTHYAGKDIGMRFAAGEPWKKVFGPIFVYLNSVSPEEDSLSLWQDAKQQLAIEINEWPYTFPQSEDFPSSAQRGSVTGRLLVRDGYISTKLMRASNAFVGLALPGPVGSWQTETKGYQFWTRADNHGNFLINNIRAGVYNLYAFVPGFIGDYKYEANITIELGSEIRLDVMVFDLPRQGPTIWEIGIPDRTAAEFYVPDPYPTLMNKLYNNQADKFRQYGLWERYAAMYPNNDLVFTVGVDDYTKDWFYAHVNRNVGNQTYQATTWEIRFLLQSVNQTANYTLQIALASAAECELQVRLNDRESEQAAFSTGKIGKDNAIARHGIHGLYWLYSIPLPGDQFLQGNNSIYLTQARNESPFEGLMYDYIRLEAPPLT 680
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
10 10884813 10897247 + CrPI670011_10g009200.1 Cre10g0920 510222
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cre10g0920 680 SUPERFAMILY Galactose mutarotase-like 59 339 IPR011013 GO:0003824(InterPro)|GO:0005975(InterPro)|GO:0030246(InterPro)
Cre10g0920 680 SUPERFAMILY Galactose-binding domain-like 484 675 IPR008979 -
Cre10g0920 680 Gene3D - 52 341 IPR014718 GO:0030246(InterPro)
Cre10g0920 680 CDD RGL4_M 377 473 IPR029413 -
Cre10g0920 680 Pfam Polysaccharide lyase family 4, domain III 486 674 IPR029411 -
Cre10g0920 680 Pfam Polysaccharide lyase family 4, domain II 400 472 IPR029413 -
Cre10g0920 680 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 50 678 IPR051850 -
Cre10g0920 680 SUPERFAMILY Starch-binding domain-like 375 476 IPR013784 GO:0030246(InterPro)
Cre10g0920 680 Gene3D - 374 476 - -
Cre10g0920 680 Pfam Rhamnogalacturonate lyase family 53 246 IPR010325 -
Cre10g0920 680 Gene3D - 484 675 - -
Cre10g0920 680 FunFam Rhamnogalacturonate lyase B 374 473 - -
Cre10g0920 680 CDD RGL4_C 488 675 - -
Cre10g0920 680 CDD RGL4_N 56 344 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre10g0920 Cre-Chr10:10884813 Cre11g1890 Cre-Chr11:30650641 1.50E-230 dispersed
Cre10g0920 Cre-Chr10:10884813 Cre04g1443 Cre-Chr4:33256604 1.90E-238 transposed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre10g0920 K18195 - csv:101215252 1265.75