Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cre10g0920 | ATGAAGCCATGGGGTAATTTGGGCCTTTGGTTCACAGCCATGGCTGCCGTTTTCCTCTTCTTCTTCTGTCTCGACCACAATGGCTACCGGATTTCAACGTTCCCAGTAAGGAGATACCTAAGGGACATGGACATCAACAATTCTTCGACACTATTCAACGTCACACTACAAAGAAACGGTGGATATGTTATAATGGACAATGGCATTGTCCTAGTTACTCTTTCAACTCCAGATGGCGACGTCGTTGGATTGAGCTACAATGGAATCGACAACTTTCTCGAAACCAAAAACGAAGAGCAAAACAGAGGCTACTGGGACGCCGTATGGAACAACCCAGACGAACCCATTACCACGGACAGATTAAAAGGAGAGAGTTTTGAAGTAATAGTAACGAACGAGGAACAACTGGAAATATCGTTTAAGAAAACATGGAGTTTTGCAGTTGGGAACGAGACGGCCCCCGTAAATGTAGACAAAAGGTATGTATTGCTGAGAGGAAGCTCTGGGTTTTATAGTTATGCAATATTCGAGAGGCCCATTGGGTGGCCCCAGATTGAAATGGATCAAGTTAGGATTGTTTACAAGCTTCAAAGCAAAATGTTTGATTATATGGCTGTGTCGGACGATAGGCAAAGGGTGATGCCCACAATGAGAGACCGTGAAAATGGTGAGCCATTGGCTTATCCCGAGGCCGTTCTTTTGACTAATCCTACCAACGAAGAACTCAGAGGAGAGGTGGATGACAAGTACCAGTACTCAACAGAGGACAAGGACAACCAAGTTCACGGCTGGATCTGCAGCGATCCGCCGGTGGGATTCTGGATGATCACTCCCAGCGACGAGTTCCGGGTCGCCGGTCCTGTCAAGCAGGATCTCACCTCCCACGCCGGCCCCATCACTCTCTCCATGTTCGTTAGCACCCACTACGCTGGAAAGGACATTGGCATGAGATTTGCAGCTGGAGAGCCCTGGAAGAAGGTCTTCGGCCCTATCTTTGTCTATCTCAACTCTGTTTCCCCTGAAGAGGATTCTCTATCCCTCTGGCAAGATGCCAAACAACAGTTGGCAATAGAAATCAATGAGTGGCCCTACACTTTTCCTCAATCAGAAGACTTCCCTTCTTCTGCCCAAAGAGGGAGTGTCACTGGCCGGTTATTAGTCCGTGATGGGTACATCAGTACCAAACTTATGCGGGCGAGTAATGCTTTCGTTGGATTGGCATTGCCTGGTCCTGTGGGATCTTGGCAAACGGAAACCAAGGGCTATCAGTTCTGGACTCGAGCTGACAATCACGGCAACTTCTTAATCAATAACATCCGAGCTGGGGTTTACAATCTGTATGCTTTTGTCCCTGGCTTCATTGGAGACTACAAATACGAAGCAAATATTACAATTGAGCTCGGGTCTGAAATCAGATTGGATGTGATGGTGTTTGATCTGCCGAGACAAGGCCCAACCATCTGGGAGATTGGCATTCCCGATCGCACTGCAGCGGAGTTTTATGTGCCCGACCCTTATCCGACTCTCATGAATAAACTGTACAACAACCAAGCTGACAAGTTCAGACAATATGGCTTGTGGGAACGTTATGCGGCTATGTATCCAAATAATGATCTTGTGTTTACCGTCGGTGTTGACGATTATACAAAGGACTGGTTCTATGCTCATGTTAACAGGAATGTGGGGAATCAAACATACCAAGCGACCACTTGGGAGATCAGATTTTTATTGCAATCTGTGAACCAAACGGCAAATTACACACTGCAAATTGCATTAGCATCTGCTGCTGAATGCGAATTACAGGTTCGATTAAACGATCGAGAATCAGAGCAGGCTGCTTTCTCGACAGGGAAGATCGGAAAGGACAATGCGATCGCAAGGCATGGCATACATGGACTTTACTGGTTATACTCCATACCTCTCCCTGGTGATCAATTTCTACAAGGGAACAACTCCATCTATCTCACTCAGGCAAGAAACGAAAGCCCTTTCGAAGGTCTCATGTACGACTACATTCGACTTGAAGCTCCACCTCTAACATAA | 2043 | 46.65 | MKPWGNLGLWFTAMAAVFLFFFCLDHNGYRISTFPVRRYLRDMDINNSSTLFNVTLQRNGGYVIMDNGIVLVTLSTPDGDVVGLSYNGIDNFLETKNEEQNRGYWDAVWNNPDEPITTDRLKGESFEVIVTNEEQLEISFKKTWSFAVGNETAPVNVDKRYVLLRGSSGFYSYAIFERPIGWPQIEMDQVRIVYKLQSKMFDYMAVSDDRQRVMPTMRDRENGEPLAYPEAVLLTNPTNEELRGEVDDKYQYSTEDKDNQVHGWICSDPPVGFWMITPSDEFRVAGPVKQDLTSHAGPITLSMFVSTHYAGKDIGMRFAAGEPWKKVFGPIFVYLNSVSPEEDSLSLWQDAKQQLAIEINEWPYTFPQSEDFPSSAQRGSVTGRLLVRDGYISTKLMRASNAFVGLALPGPVGSWQTETKGYQFWTRADNHGNFLINNIRAGVYNLYAFVPGFIGDYKYEANITIELGSEIRLDVMVFDLPRQGPTIWEIGIPDRTAAEFYVPDPYPTLMNKLYNNQADKFRQYGLWERYAAMYPNNDLVFTVGVDDYTKDWFYAHVNRNVGNQTYQATTWEIRFLLQSVNQTANYTLQIALASAAECELQVRLNDRESEQAAFSTGKIGKDNAIARHGIHGLYWLYSIPLPGDQFLQGNNSIYLTQARNESPFEGLMYDYIRLEAPPLT | 680 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 10884813 | 10897247 | + | CrPI670011_10g009200.1 | Cre10g0920 | 510222 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cre10g0920 | 680 | SUPERFAMILY | Galactose mutarotase-like | 59 | 339 | IPR011013 | GO:0003824(InterPro)|GO:0005975(InterPro)|GO:0030246(InterPro) | |
Cre10g0920 | 680 | SUPERFAMILY | Galactose-binding domain-like | 484 | 675 | IPR008979 | - | |
Cre10g0920 | 680 | Gene3D | - | 52 | 341 | IPR014718 | GO:0030246(InterPro) | |
Cre10g0920 | 680 | CDD | RGL4_M | 377 | 473 | IPR029413 | - | |
Cre10g0920 | 680 | Pfam | Polysaccharide lyase family 4, domain III | 486 | 674 | IPR029411 | - | |
Cre10g0920 | 680 | Pfam | Polysaccharide lyase family 4, domain II | 400 | 472 | IPR029413 | - | |
Cre10g0920 | 680 | PANTHER | RHAMNOGALACTURONATE LYASE FAMILY PROTEIN | 50 | 678 | IPR051850 | - | |
Cre10g0920 | 680 | SUPERFAMILY | Starch-binding domain-like | 375 | 476 | IPR013784 | GO:0030246(InterPro) | |
Cre10g0920 | 680 | Gene3D | - | 374 | 476 | - | - | |
Cre10g0920 | 680 | Pfam | Rhamnogalacturonate lyase family | 53 | 246 | IPR010325 | - | |
Cre10g0920 | 680 | Gene3D | - | 484 | 675 | - | - | |
Cre10g0920 | 680 | FunFam | Rhamnogalacturonate lyase B | 374 | 473 | - | - | |
Cre10g0920 | 680 | CDD | RGL4_C | 488 | 675 | - | - | |
Cre10g0920 | 680 | CDD | RGL4_N | 56 | 344 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cre10g0920 | Cre-Chr10:10884813 | Cre11g1890 | Cre-Chr11:30650641 | 1.50E-230 | dispersed | |
Cre10g0920 | Cre-Chr10:10884813 | Cre04g1443 | Cre-Chr4:33256604 | 1.90E-238 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cre10g0920 | K18195 | - | csv:101215252 | 1265.75 |