Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre10g0931 ATGGCTCCTGCCACTAACTGGCTCTCCTTCTCTCTTTCCCCCATTGAAATGCTTCGCTCCACTGATTCTCCCTTTCTTCCTTATGATTCTTCCTCCACCCCCTCCCCTCACTATCTCCTCGACAATTTCTACTCTCATACTGGATGGAGTAACAGTAATACATCTCACCCAAAATCATCTCAACTTTTCTTCATGGATGGAGATGAAAATAACGATGCTGTGAAAGAAGACCAAACAACGACACCCACCATTTTTAGTACCTTCCTTCATCCACAAACCCATCATCACCACCAACCCAAGCTTGAAGATTTCCTGGGCGATTCCTCTCCCATGGTGCGATATTCCGACAGCCAAACCGACACTCAAGATTCCTCTTTAACTCATATTTACGACCATGCTTCCGCCCCCCCTTACTTCGCCGACCAACAAGATCTCAAAACCATTGCTGCTTTTCAAGCTTTTTCAGCCAACTCTGGCTCTGAAGTTGATGATTCTGCTTCTATTGCTAGAACCCATATCCCCTCTGCTCATTCTATTGAATCTTCTCTCACTAATAATGAGTTGCCCTCTTTCTCTAACTGCCCTACCGGTGCTCTCTCACTCGCTGTCGCTCACTCCTCCGACACCGCCACTGCTGGGCCTATTGTGGCTGTAGATTCTGAGTCCTCTAAGAAAATTGCTGATACTTTTGGCCAGAGAACTTCCATTTACAGAGGTGTCACTAGGCACAGATGGACGGGTAGATACGAAGCGCATCTATGGGATAACAGCTGTAGAAGAGAGGGTCAGGCTAGGAAAGGACGTCAAGGTGGGTATGATAAGGAGGAAAAAGCAGCTAGGGCTTATGATTTGGCGGCTTTGAAGTACTGGGGTCCCACAGCAACCACCAATTTTCCTGTTTCAAATTATGCCAAGGAATTGGAAGAAATGAAACATGTCACCAAACAAGAGTTTATTGCTTCCTTGCGAAGAAAGAGCAGCGGTTTTTCGCGAGGTGCCTCTATTTATAGAGGTGTTACAAGGCATCATCAGCAGGGTCGATGGCAGGCAAGAATTGGTCGTGTTGCTGGCAACAAGGACTTGTATCTCGGGACGTTTGCTACTGAAGAGGAAGCAGCCGAGGCTTACGATATAGCAGCAATCAAGTTTAGAGGTTTGAATGCCGTGACAAACTTTGAGATGAGTCGATATGATGTGGAAGCTATTGCAAAGAGTGCGCTGCCTATCGGGGGAGCAGCAAAGAGGCTGAAGCTTTGTCTGGAATCCGATCAGAAGCCGATTCCAAATCACGATCAAGCAACCCAATGCAGCAGTGGAAGCAACAATATCAACTTCGGCACCACTGTGCAAGCTGTGCCACCAATCCCTTGTGGTATTCCATACGACACTGCAGCTGTGCTGTATCACCATAATTACTTCCATCATCTTCAACCTAATGCCATCGGTTCGTCGGAGTCGACCAGCCCAGGCATTGCAGGACTGGGGACTGTGGCACCTCAAGCAGCCGAGTTTTTTGTTTGGCCTCGCCAATCGTATTAA 1539 47.5 MAPATNWLSFSLSPIEMLRSTDSPFLPYDSSSTPSPHYLLDNFYSHTGWSNSNTSHPKSSQLFFMDGDENNDAVKEDQTTTPTIFSTFLHPQTHHHHQPKLEDFLGDSSPMVRYSDSQTDTQDSSLTHIYDHASAPPYFADQQDLKTIAAFQAFSANSGSEVDDSASIARTHIPSAHSIESSLTNNELPSFSNCPTGALSLAVAHSSDTATAGPIVAVDSESSKKIADTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQARKGRQGGYDKEEKAARAYDLAALKYWGPTATTNFPVSNYAKELEEMKHVTKQEFIASLRRKSSGFSRGASIYRGVTRHHQQGRWQARIGRVAGNKDLYLGTFATEEEAAEAYDIAAIKFRGLNAVTNFEMSRYDVEAIAKSALPIGGAAKRLKLCLESDQKPIPNHDQATQCSSGSNNINFGTTVQAVPPIPCGIPYDTAAVLYHHNYFHHLQPNAIGSSESTSPGIAGLGTVAPQAAEFFVWPRQSY 512
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 12004700 12008622 + CrPI670011_10g009310.1 Cre10g0931 510233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre10g0931 512 ProSiteProfiles AP2/ERF domain profile. 236 299 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre10g0931 512 CDD AP2 235 301 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre10g0931 512 SUPERFAMILY DNA-binding domain 334 395 IPR016177 GO:0003677(InterPro)
Cre10g0931 512 Pfam AP2 domain 336 385 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre10g0931 512 SUPERFAMILY DNA-binding domain 235 301 IPR016177 GO:0003677(InterPro)
Cre10g0931 512 CDD AP2 334 395 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre10g0931 512 SMART rav1_2 335 399 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre10g0931 512 SMART rav1_2 236 305 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre10g0931 512 PRINTS Ethylene responsive element binding protein signature 375 395 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre10g0931 512 PRINTS Ethylene responsive element binding protein signature 237 248 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre10g0931 512 FunFam AP2-like ethylene-responsive transcription factor 334 395 - -
Cre10g0931 512 ProSiteProfiles AP2/ERF domain profile. 335 393 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre10g0931 512 FunFam AP2-like ethylene-responsive transcription factor ANT 235 301 - -
Cre10g0931 512 Gene3D AP2/ERF domain 335 395 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre10g0931 512 Gene3D AP2/ERF domain 236 301 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre10g0931 512 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 143 429 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre08g1616 Cre-Chr8:28644650 Cre10g0931 Cre-Chr10:12004700 5.70E-86 dispersed
Cre10g0931 Cre-Chr10:12004700 Cre11g1355 Cre-Chr11:15777955 1.00E-98 dispersed
Cre10g0931 Cre-Chr10:12004700 Cre04g1401 Cre-Chr4:32806208 1.40E-87 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54509 PF00847 AP2 1.90E-09 CL0081 Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre10g0931 K09285 - csv:101217714 878.241