Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre10g0936 ATGGAACTACCTTCACCATTTGTTTTCTTACTCCACCACCTTCCTCATCGTCATCATCGATTACCCAATTTCAGATCAATAGCAGCTGTCATTGTGCTGCATAGGAGTCTCATTGTTCAAGTTCCATCTTCCCAGCATTTATTTAGTCTTAGCAATGGTTCTTGTTGGTTCTTTGCAACTTTTACCTCTCAGAGCTATAACATACGACTACTGAATGTAGCCAGTCCATCGTCTCTTTTATTTCAGAAGAACACTTGGAGCCCTCATTTATTTAGCATGAAATACCCACCTAATTACATTGTGCCTTCTAGATGCAATGTACTCAGGTGCCAGTCATCATTGATGACAAACCAACCACTGGATCCCCCTGGGATGAAGGCTGCTATAGTGGCATTGACAAGGTTTTGTAATGTATTAGGTGCTTGTCCTCCTCCAGTGGTTAATTTGGTTCCTGCAGTTTGTATTATCATGTTTGCTGTATGGGGTCTTGGACCATTTTTGCGTTATACGAGAAGCCTATTCCATAATGATAGTAACTGGAAGAAAAGTCGGACATATAACATCATGACCTTGTATCTTCAACCATTACTGCTGTGGACTGGAGCAACACTTATTTGCAGAGCTTTAGATCCAGTAGTTTTACCTACAGAGTCCAGCCAAGTTGTGAAGCAACGAGTGTTGAATTTTGTTAGGTCGTTGTCCACTGTGCTGGCCTTTGCATATTGCTTATCTAGCATGATTCAACAAGCACAGAAATTCTTCTCAGAGAGTACTGATTCCAGTGACGCGAGAAATATGGGCTTTCAATTTGCTTGGAAAGCTGTATACTCTGCCGTATGGGTTGCCGCTCTCTCATTGTTCATGGAGCTGTTGGGCTTTTCAACCCAAAAATGGCTTACAGCTGGAGGTCTTGGGACGGTATTGCTGACATTAGCTGGCCGTGAGATTTTCACCAACTTCCTCTCAAGTGTGATGATTCATGCAACTCGTCCTTTTGTTGTTAATGAGTGGATCCAAACGAAGATTGAGGGCTACGAAGTTTCTGGCACTGTTGAGCACGTAGGGTGGTGGTCGCCAACAATCATTAGAGGTGAAGATCGTGAAGCAGTTCACATACCAAACCATAAGTTTACCATGAATGTCGTTAGAAATCTCAGTCAAAAAACTCACTGGCGGATTAAAACCCACCTTGCCATTAGCCATTTGGACGTCAACAAAATCAATAACATTGTTGCAGACATGCGGAAAGTCCTGGCGAAGAACCCTCAAGTTGAACAACAGAGATTGCATAGAAGAGTATTTTTGGAAAACGTGGATCCTGAAAATCAGGCACTTTTGATTTTGATATCGTGTTTTGTTAAGACTTCACATTTTGAAGAATACCTTTGTGTAAAGGAAGCTATAATTTTGGATCTTCTTAGAGTCATTAGACATCACCGGGCTCGACTTGCAACACCAATCCGCACAATGCAGAAGATGCATAGTGATTCAGACATGGAAAGCGTTCCATTTTCTGATTCAATATTTGGCCACCGTGGTGCGACTTTGAATCGCCGCATGCTGATGATTGAGCCCCCTTACAAAGTTTATGGAGAAGATAGAAAGCAAAGCCATAGCAGGACATCACGCACAACGGGAGAACAAAATGGTAAGCCCGTTGCACGGTCGTCGGGTGACAGCAAGGCTGCCAAAGAGACAATGCCATCTGATAGAAAGACAGAAGTCAAGACTGGAGGAGATGCTGATACAAAAATGCATCCCAAAGTTTCGATGTCAACCTCTGAAGATAGATCAAGCAATGAATTGAAACATAAACCATCATCAAGGTCTGCTGCAAGTACCAGTACCTCTGATATGCCAGATGCCAAAACAACTAAATTAGATGCTGATAATTCAATGGAAGATTCTAGTCCCAAGCAATCCGAAAATAGCTTGGGAAGTAACAAGCAGAACTTCAAGCCTTCCCTTCCTGTTGTTTCCTTTCCGGAAGATGTTAAGAAACCAGGAGGAACTACTTCAGCAGCAGCTTCACAGCCAAGGATAGAAGGTGAGCAGACAACAGTTTCAAATCCATCGATAACAAAGCCTGGCGTGGAAGAGAATATAATCCTTGGTGTTGCTTTGGATGGCTCTAAGAGAACACTTCCTATTGAGGATGAAGTACCTACCGCATCGGGAGCAAAAGATTTGGCTGCATGCAGGAATGGGAACAGTGCGAATGGAGCAACAACGGCAGATAAGAACATGAAACGTCAGTCTCCTTCTTCCCCTACCACATCTTCTAGTGAATAG 2292 42.98 MELPSPFVFLLHHLPHRHHRLPNFRSIAAVIVLHRSLIVQVPSSQHLFSLSNGSCWFFATFTSQSYNIRLLNVASPSSLLFQKNTWSPHLFSMKYPPNYIVPSRCNVLRCQSSLMTNQPLDPPGMKAAIVALTRFCNVLGACPPPVVNLVPAVCIIMFAVWGLGPFLRYTRSLFHNDSNWKKSRTYNIMTLYLQPLLLWTGATLICRALDPVVLPTESSQVVKQRVLNFVRSLSTVLAFAYCLSSMIQQAQKFFSESTDSSDARNMGFQFAWKAVYSAVWVAALSLFMELLGFSTQKWLTAGGLGTVLLTLAGREIFTNFLSSVMIHATRPFVVNEWIQTKIEGYEVSGTVEHVGWWSPTIIRGEDREAVHIPNHKFTMNVVRNLSQKTHWRIKTHLAISHLDVNKINNIVADMRKVLAKNPQVEQQRLHRRVFLENVDPENQALLILISCFVKTSHFEEYLCVKEAIILDLLRVIRHHRARLATPIRTMQKMHSDSDMESVPFSDSIFGHRGATLNRRMLMIEPPYKVYGEDRKQSHSRTSRTTGEQNGKPVARSSGDSKAAKETMPSDRKTEVKTGGDADTKMHPKVSMSTSEDRSSNELKHKPSSRSAASTSTSDMPDAKTTKLDADNSMEDSSPKQSENSLGSNKQNFKPSLPVVSFPEDVKKPGGTTSAAASQPRIEGEQTTVSNPSITKPGVEENIILGVALDGSKRTLPIEDEVPTASGAKDLAACRNGNSANGATTADKNMKRQSPSSPTTSSSE 763
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 12310075 12318164 + CrPI670011_10g009360.1 Cre10g0936 510238

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre10g0936 763 MobiDBLite consensus disorder prediction 736 763 - -
Cre10g0936 763 MobiDBLite consensus disorder prediction 564 583 - -
Cre10g0936 763 Gene3D - 332 387 IPR023408 -
Cre10g0936 763 MobiDBLite consensus disorder prediction 636 655 - -
Cre10g0936 763 MobiDBLite consensus disorder prediction 605 622 - -
Cre10g0936 763 PANTHER OW CONDUCTANCE MECHANOSENSITIVE CHANNEL 62 740 IPR045042 -
Cre10g0936 763 Pfam Mechanosensitive ion channel, beta-domain 316 386 IPR006685 GO:0016020(InterPro)|GO:0055085(InterPro)
Cre10g0936 763 SUPERFAMILY Sm-like ribonucleoproteins 316 386 IPR010920 -
Cre10g0936 763 MobiDBLite consensus disorder prediction 726 763 - -
Cre10g0936 763 Gene3D - 226 330 - -
Cre10g0936 763 MobiDBLite consensus disorder prediction 528 695 - -
Cre10g0936 763 MobiDBLite consensus disorder prediction 671 695 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre10g0936 K22047 - - csv:101217250 1224.92
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre08g1108 Cre-Chr8:24243536 Cre10g0936 Cre-Chr10:12310075 1.10E-188 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cre05g0220 . 240 630 Mechanosensitive Ion Channel Family AT4G00290 67.0 4.1e-153 538.5
Cre08g1108 . 10 651 Mechanosensitive Ion Channel Family AT5G10490 58.7 3.7e-197 685.3
Cre10g0936 . 89 762 Mechanosensitive Ion Channel Family AT5G10490 55.2 1.9e-190 662.9
Cre08g1108 . 10 631 Mechanosensitive Ion Channel Family AT1G58200 57.6 4.4e-198 688.3
Cre10g0936 . 77 539 Mechanosensitive Ion Channel Family AT1G58200 65.5 8.3e-173 604.4
Cre02g1419 . 43 928 Mechanosensitive Ion Channel Family AT1G53470 55.0 3.1e-260 895.2
Cre02g0740 . 91 952 Mechanosensitive Ion Channel Family AT1G53470 51.1 3.3e-238 822.0
Cre02g1419 . 43 926 Mechanosensitive Ion Channel Family AT3G14810 52.9 4.9e-247 851.3
Cre02g1419 . 43 928 Mechanosensitive Ion Channel Family AT1G78610 58.7 2.6e-280 961.8
Cre02g0740 . 59 952 Mechanosensitive Ion Channel Family AT1G78610 56.1 3.7e-271 931.4
Cre02g1419 . 226 928 Mechanosensitive Ion Channel Family AT2G17000 61.6 2.7e-237 818.9
Cre02g0740 . 266 934 Mechanosensitive Ion Channel Family AT2G17000 58.7 3.2e-222 768.8
Cre02g1419 . 1 675 Mechanosensitive Ion Channel Family AT2G17010 50.6 4.1e-164 575.5
Cre05g1735 . 69 721 Mechanosensitive Ion Channel Family AT5G19520 53.2 1.9e-183 639.8
Cre05g1735 . 64 721 Mechanosensitive Ion Channel Family AT5G12080 58.2 2.4e-202 702.6
Cre03g1794 . 58 750 Mechanosensitive Ion Channel Family AT5G12080 54.0 1.1e-199 693.7
Cre05g1731 . 69 706 Mechanosensitive Ion Channel Family AT5G12080 50.1 4.9e-163 572.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001552 2 6 1 1 1 2 3 2 2 2 2 2 3 2 2 3 2 3 3 2 2 2 2 3 2 2 2 6 2 2 71