Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre10g0950 ATGGAGGGAATGCCGCACCCAATACCCCGTACAGTGGAGGAGGTCTACGGCGACTTCAAAGGCAGGCGTGCCGGCTTGATCAAAGCCCTCACCACTGATGTCGAGAAGTTCTACCAGCAGTGCGATCCTGAGAAGGAGAACTTGTGTCTCTATGGACTTCCAAATGAAACGTGGGAAGTTAACTTGCCGGTGGAGGAGGTGCCTCCTGAGCTCCCGGAACCAGCATTAGGTATAAACTTTGCAAGGGATGGGATGCAGGAGAAAGACTGGTTATCGCTGGTTGCAGTTCACAGTGACTCATGGTTGCTTGCTGTTGCATTCTATTTTGGTGCTCGTTTTGGGTTTGGGAAGACTGAAAGGAAGAGGCTATTCCAGATGATCAACGATCTCCCAAGTGTATTTGAAGTTGTGACTGGAAATGGTAAGCAGTCGAAAGAGCAGTCTGCCACACATAACAATGGCAGTAAAAGCAAGTCGAGTGGAAAGATGTCCCGGCAATTGGAGTCCCATAGCAAGGGAGTGAAGATGTCTCCACCACCGAAAGAGGATGAAGATAGCGGGGATGATGAGGAGGAAGAAGAAGATGATGAACAGGGTGCAACATGTGGGGCTTGTGGGGACAACTACGGCAATGACGAATTCTGGATTTGTTGCGATGTGTGTGAAAGATGGTTCCATGGAAAATGTGTGAAGATTACACCTGCAAAGGCGGAGCATATCAAGCAATACAAGTGTCCAAGTTGCAGTAACAAGAGAGCAAGGGCTGTCTATGGCAGGGCCGGGAGGACCTGGAATGAAAGTGATTTGTTCTGCCTTTATGCTTGTTGGTTGAAGGCTGAGGTCTGTTTGAATGATTTAACGTTATCTAACAAACAGGAGAAGACAATGAGCAATGTCAAGTCTTGCTTGTTTGAATGCTTGTCTGTGGACTTCTTAAGCAATTGGGAGAACTTGGTATCGCTTAATGGAAATGAAAACAGAAAGGAGAACAAAAATCCATTGGAATGA 1008 47.02 MEGMPHPIPRTVEEVYGDFKGRRAGLIKALTTDVEKFYQQCDPEKENLCLYGLPNETWEVNLPVEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDSWLLAVAFYFGARFGFGKTERKRLFQMINDLPSVFEVVTGNGKQSKEQSATHNNGSKSKSSGKMSRQLESHSKGVKMSPPPKEDEDSGDDEEEEEDDEQGATCGACGDNYGNDEFWICCDVCERWFHGKCVKITPAKAEHIKQYKCPSCSNKRARAVYGRAGRTWNESDLFCLYACWLKAEVCLNDLTLSNKQEKTMSNVKSCLFECLSVDFLSNWENLVSLNGNENRKENKNPLE 335
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 12917239 12924766 + CrPI670011_10g009500.1 Cre10g0950 510252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre10g0950 335 MobiDBLite consensus disorder prediction 141 200 - -
Cre10g0950 335 Pfam Alfin 11 138 IPR021998 GO:0006355(InterPro)|GO:0042393(InterPro)
Cre10g0950 335 Pfam PHD-finger 202 248 IPR019787 -
Cre10g0950 335 FunFam PHD finger alfin-like protein 194 250 - -
Cre10g0950 335 CDD PHD_AL_plant 202 251 IPR044104 -
Cre10g0950 335 MobiDBLite consensus disorder prediction 141 162 - -
Cre10g0950 335 ProSitePatterns Zinc finger PHD-type signature. 202 248 IPR019786 -
Cre10g0950 335 MobiDBLite consensus disorder prediction 183 200 - -
Cre10g0950 335 ProSiteProfiles Zinc finger PHD-type profile. 199 251 IPR019787 -
Cre10g0950 335 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 191 250 IPR013083 -
Cre10g0950 335 SUPERFAMILY FYVE/PHD zinc finger 190 254 IPR011011 -
Cre10g0950 335 MobiDBLite consensus disorder prediction 163 182 - -
Cre10g0950 335 PANTHER CPG BINDING PROTEIN 9 254 IPR045104 GO:0000976(PANTHER)|GO:0003712(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0042393(InterPro)
Cre10g0950 335 SMART PHD_3 201 249 IPR001965 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre09g0076 Cre-Chr9:1041870 Cre10g0950 Cre-Chr10:12917239 6.30E-94 dispersed
Cre10g0950 Cre-Chr10:12917239 Cre10g2315 Cre-Chr10:37383209 4.80E-81 dispersed
Cre10g0950 Cre-Chr10:12917239 Cre11g0655 Cre-Chr11:3648964 1.90E-98 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54511 PF12165 Alfin 4.70E-68 No_clan Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre10g0950 K26274 - csv:101212601 486.878