Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre10g0957 ATGTATTCAATGGAGTTAGGGTTTGTTGAGGAAAAAGGGGAATTGAAGTTATATAATAAAAAAAAAGAATTTTTTTTTTTCTTTCTTCTCCTCCTTCCTCCCCGTGCCGCCGTCTTCCCCTCCACTGGTTTTTCTTTTTCTTTCTTCAATCGCCGCTGCCGTCAGTGCTGCCTACCGTCGCCTCGCTCGGGGTGTGTCGTCGCTGTGGGCCTCGTCCGGTCGCCGTTGGAGAAGCCAGTCGTGCCGCCGTTCGCTTGCTTCTGTGGGTGGGTTTTCCATCGTCGCTTTGGTGTTGACTCCGAACTCGCAGTTGTCAGTTGGGGAAGGTCGCTGGTGTCGTCTGGGCATCCAGATCCTCCACTAGCCGCTGCCGTGCCGTTTTCTGCCACTGCCGCCTTCCAATTTCAGTTTTGGTTTAGAAGCTTGGTGGCGAATTTTGGGTTGGACTCCTCGGTACGTTGTGCTCATTCATGTTCATCCATGTCTCACCGCAACCATGACGATGAAGGTGACGTTGAGCTTCCTGTCAGCAAGGAAGATGATGTGGTTGATGAGGACATGGAAGCCCTTCGGAGAGCCTATAAGCATGTTGGAGTTAATCCTGAGGATTACATTAATCCTAGGTTGTCATCACCTGTTGCCGGAGATGCTAATCCTAGTTCTGATTCTGATGATGTTGATGATTTTGAACTTCTTCGAAATATTCAGAACCGGTTCTCATGTGTGGCTGATGAGCAGCCGTTGAGTACTCTCCCACCAATGTCCCTAGACGAGGAGGAAGATGAATTTGAGATGCTTCGTTCAATTCAGCGGCGCTTTGCAGCGTACGAAAGTGATACTTTGAGCAATAAACCCAATCAGTTGTGTGACCATGTTGGGTCTTTGAAGATGGATTTTGACAACACAGCTGTTGAGAGTCAGACAGCCTCAAAAAGGCCATCCATGCTAGCCTTTGAAAAGGGAAGCTTGCCAAAAGCTGCATTGGCATTTATTGATGCCATCAAGAAAAATAGGTCCCAGCAGAAGTTTATTCGTAGTAAGATGATTCATCTTGAAGCTAGAATTGAGGAGAACAAAAAGCTCAGAAAACGTTTCAAAATTCTCAAAGATTTCCAGGGTTCATGTAAACGGAGAACAACCTGTGCACTGTCTCAAATGATAGATCCTCGAGTCCAGTTGATTTCAGCTGCAAAACCACAAGCAAAGGATTCATCAAAGAAGGACAAACGATTATCTGCAATGCATTATGGCCCAGCTGAGAATTCTCATGTTGCATGCTACAGAATGGCATTGATGAAGTTTCCTCGTGTAGATCGAAAAAAATGGTCCGTTGTAGAAAGGGAGAATCTAGGGAAGGGAATAAGACAGCAATTTCAGGAGATGGTGCTTCAGATTTCAGTGGATCAAATTAGTGGGCTACAAGGATTTTCTGCAGATTCAGATGATTTGGATAACATTCTTGCATCAATAAAAGACCTTGACATCACTCCTGAAAAGATTAGGGAATTTCTGCCAAAAGTTAATTGGGACAAATTGGCTTCCATGTATCTTCGGGGTCGCTCAGGGGCAGAATGTGAAGCGAGGTGGTTGAATTTCGAAGACCCCCTAATTAATCGGGATCCATGGACTACAAGTGAGGATAAGAATCTTTTGTTTACTATCCAACAGAAGGGGTTGAATAACTGGATTGAGATAGCAGTTTCGTCGGGTACAAATAGAACTCCTTTTCAGTGCTTGTCTCGGTATCAAAGGAGTTTAAACGCTTCCATATTAAAGAGGGAGTGGACCAAAGACGAGGATGATAAACTTCGAGCTGCTGTTGCTACATTTGGCCTGGGAGATTGGCAGGCAGTAGCTTCTACTTTGGAAGGACGAACTGGCCCACAGTGCTCTAATAGGTGGAAAAAATCCCTTGACCCAGCTAGGACAAAAAGAGGTCATTTCACTCCAGATGAAGACAGTCGCTTGAAAATTGCTGTACTGCTCTTTGGGCCTAAAAATTGGAACAAGAAAGCAGAATTTTTACCTGGTCGAAATCAAGTTCAATGCAGAGAAAGATGGTTTAATTGTTTAGATCCTTCCTTGAGAAGATGCGAATGGACAGAAGAGGAGGATTTAAGGCTGGAGATAGCAATTCGGGAACATGGATATAGCTGGGCTAAGGTAGCTGCATGTGTGCCATCACGTACAGATAATGATTGTCGGAGGAGATGGAAGAAGTTATTTCCCAATGAAGTTCCGTTACTCCAGGAAGCTAGAAAGATTCAGAAGGCTGCTCTTATTAGCAACTTTGTTGATAGGGAATCAGAGCGTCCTGCTCTTGGTCCTACTGACTTTCGACCCAGGCCAAACACAGATTTATTGTGTAATAGTGTTGATCCAAGACCTGCCCCGAAAAGAAATGTGAAGACAAGAAAGATGCCAGTGTCAAGGAATGAAAAGAGTGCTACTGGTGATGCTCCAAAGAAGAGGAAATCAAATTGCCAGAGGAATCAGGCTGATGCAACTGCTCAGGCGGGTATTGGAAATAATACCTCTTCTGTCCCAGAAGAGGTTAAATCTCTAAAGCCTCAAAGAAAACAAAATAGACATGGAGCTTATACCGCAGAAAGTATAGGGGTTCCGGAGCTATGTCCTAACAGCGAGTGGTGTGCTAAACAGAGTTTGGACACTCAGAGCCTTGGGGTGCAGCTTAATAGTAAGGAATCTGAGGGGACCAACAGCGACTGCATCGAGACTGTTGATGAGAATGGTATGGAGGTATTTGAGAACAAAGTTGCAGAGAAACTTTCTGAAAGAGATGTATGTTTTTCAGAACCAGAAGCAATTCAAAACTCAACCGGATCTTCTGGAGTCTCGGTATTGTCAGAAATGACTAATGACATGGATGAATACAATCCGTCTATCATTCCAGATACAACATTGTTGGCTAGTACTACTGTGGATGATCTCAAAGAATTGAAGAGGAAGAGTGTTGCAGACAGAGATCTGGATGACTGTAACAGTTTCTCGTTACCGTGCAGTGACTTGGAACTCAGGGCAATCGACAACGAAGGTGTGGACAGTTATTCCATGGATGAATTTACAGATAAAAGCCATGGGGTTTGCAAGCCCCCCCATACCAGAAGGAAGAAAAACAGCAAAACATCAAGTAAGAGCCAGGATCATTCCTTTGTTTCTTGTCAACAAGTGGAGTTGGAGAGGTTGGGGACAAATGAGCCTCGTCGTCATAATCAATCAAAAAAGAGAAAACATAACAGTACAAATACGAATCTGGAGGCAGTTGAGGAGGTTGATGACTGCACACTCGTGGGCTTTTTGCAAAAAAGATTGAAGAGGACGACGACAACAAATGACAAGAAAGTTGATTGCAGTTCAAGTACTCCCCTAGAAGTCGATACTGATGACAATGATCCTACCCTTGCCTCGTTTCTTAATAAATTAAAGAGAAAAAAGCATCAGCCGAGTAGTGGTGGTGAGTTAAACTAG 3489 44.17 MYSMELGFVEEKGELKLYNKKKEFFFFFLLLLPPRAAVFPSTGFSFSFFNRRCRQCCLPSPRSGCVVAVGLVRSPLEKPVVPPFACFCGWVFHRRFGVDSELAVVSWGRSLVSSGHPDPPLAAAVPFSATAAFQFQFWFRSLVANFGLDSSVRCAHSCSSMSHRNHDDEGDVELPVSKEDDVVDEDMEALRRAYKHVGVNPEDYINPRLSSPVAGDANPSSDSDDVDDFELLRNIQNRFSCVADEQPLSTLPPMSLDEEEDEFEMLRSIQRRFAAYESDTLSNKPNQLCDHVGSLKMDFDNTAVESQTASKRPSMLAFEKGSLPKAALAFIDAIKKNRSQQKFIRSKMIHLEARIEENKKLRKRFKILKDFQGSCKRRTTCALSQMIDPRVQLISAAKPQAKDSSKKDKRLSAMHYGPAENSHVACYRMALMKFPRVDRKKWSVVERENLGKGIRQQFQEMVLQISVDQISGLQGFSADSDDLDNILASIKDLDITPEKIREFLPKVNWDKLASMYLRGRSGAECEARWLNFEDPLINRDPWTTSEDKNLLFTIQQKGLNNWIEIAVSSGTNRTPFQCLSRYQRSLNASILKREWTKDEDDKLRAAVATFGLGDWQAVASTLEGRTGPQCSNRWKKSLDPARTKRGHFTPDEDSRLKIAVLLFGPKNWNKKAEFLPGRNQVQCRERWFNCLDPSLRRCEWTEEEDLRLEIAIREHGYSWAKVAACVPSRTDNDCRRRWKKLFPNEVPLLQEARKIQKAALISNFVDRESERPALGPTDFRPRPNTDLLCNSVDPRPAPKRNVKTRKMPVSRNEKSATGDAPKKRKSNCQRNQADATAQAGIGNNTSSVPEEVKSLKPQRKQNRHGAYTAESIGVPELCPNSEWCAKQSLDTQSLGVQLNSKESEGTNSDCIETVDENGMEVFENKVAEKLSERDVCFSEPEAIQNSTGSSGVSVLSEMTNDMDEYNPSIIPDTTLLASTTVDDLKELKRKSVADRDLDDCNSFSLPCSDLELRAIDNEGVDSYSMDEFTDKSHGVCKPPHTRRKKNSKTSSKSQDHSFVSCQQVELERLGTNEPRRHNQSKKRKHNSTNTNLEAVEEVDDCTLVGFLQKRLKRTTTTNDKKVDCSSSTPLEVDTDDNDPTLASFLNKLKRKKHQPSSGGELN 1162
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 13116172 13134120 - CrPI670011_10g009570.1 Cre10g0957 510259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre10g0957 1162 CDD SANT 648 689 IPR001005 -
Cre10g0957 1162 SUPERFAMILY Homeodomain-like 531 587 IPR009057 -
Cre10g0957 1162 SMART sant 696 744 IPR001005 -
Cre10g0957 1162 SMART sant 644 693 IPR001005 -
Cre10g0957 1162 SMART sant 538 588 IPR001005 -
Cre10g0957 1162 SMART sant 438 535 IPR001005 -
Cre10g0957 1162 SMART sant 591 640 IPR001005 -
Cre10g0957 1162 MobiDBLite consensus disorder prediction 770 867 - -
Cre10g0957 1162 ProSiteProfiles Myb-like domain profile. 692 742 IPR001005 -
Cre10g0957 1162 ProSiteProfiles Myb-like domain profile. 587 638 IPR001005 -
Cre10g0957 1162 MobiDBLite consensus disorder prediction 205 224 - -
Cre10g0957 1162 MobiDBLite consensus disorder prediction 1026 1091 - -
Cre10g0957 1162 ProSiteProfiles SANT domain profile. 590 639 IPR017884 -
Cre10g0957 1162 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 587 642 IPR017930 -
Cre10g0957 1162 MobiDBLite consensus disorder prediction 830 852 - -
Cre10g0957 1162 Gene3D - 591 641 - -
Cre10g0957 1162 SUPERFAMILY Homeodomain-like 571 640 IPR009057 -
Cre10g0957 1162 CDD SANT 594 638 IPR001005 -
Cre10g0957 1162 CDD SANT 699 742 IPR001005 -
Cre10g0957 1162 MobiDBLite consensus disorder prediction 1115 1139 - -
Cre10g0957 1162 SUPERFAMILY Homeodomain-like 642 738 IPR009057 -
Cre10g0957 1162 Gene3D - 536 587 - -
Cre10g0957 1162 PANTHER SNRNA-ACTIVATING PROTEIN COMPLEX SUBUNIT 4 164 1153 IPR051575 GO:0000978(PANTHER)|GO:0001006(PANTHER)|GO:0019185(PANTHER)|GO:0042795(PANTHER)|GO:0042796(PANTHER)
Cre10g0957 1162 MobiDBLite consensus disorder prediction 806 829 - -
Cre10g0957 1162 Pfam Myb-like DNA-binding domain 592 636 IPR001005 -
Cre10g0957 1162 Pfam Myb-like DNA-binding domain 697 741 IPR001005 -
Cre10g0957 1162 Pfam Myb-like DNA-binding domain 539 584 IPR001005 -
Cre10g0957 1162 Pfam Myb-like DNA-binding domain 645 691 IPR001005 -
Cre10g0957 1162 Gene3D - 699 745 - -
Cre10g0957 1162 ProSiteProfiles Myb-like domain profile. 640 691 IPR001005 -
Cre10g0957 1162 MobiDBLite consensus disorder prediction 1120 1134 - -
Cre10g0957 1162 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 692 746 IPR017930 -
Cre10g0957 1162 Gene3D - 642 696 - -
Cre10g0957 1162 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 644 691 IPR017930 -
Cre10g0957 1162 ProSiteProfiles Myb-like domain profile. 534 586 IPR001005 -
Cre10g0957 1162 MobiDBLite consensus disorder prediction 1052 1067 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre06g1837 Cre-Chr6:23259787 Cre10g0957 Cre-Chr10:13116172 1.30E-10 dispersed
Cre10g0957 Cre-Chr10:13116172 Cre10g0736 Cre-Chr10:7159592 1.00E-08 dispersed
Cre10g0957 Cre-Chr10:13116172 Cre06g2569 Cre-Chr6:33370192 1.10E-15 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54512 PF13921 Myb_DNA-bind_6 2.90E-11 CL0123 Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre10g0957 K09422 - csv:101216287 1665.97