Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre10g0957 ATGTATTCAATGGAGTTAGGGTTTGTTGAGGAAAAAGGGGAATTGAAGTTATATAATAAAAAAAAAGAATTTTTTTTTTTCTTTCTTCTCCTCCTTCCTCCCCGTGCCGCCGTCTTCCCCTCCACTGGTTTTTCTTTTTCTTTCTTCAATCGCCGCTGCCGTCAGTGCTGCCTACCGTCGCCTCGCTCGGGGTGTGTCGTCGCTGTGGGCCTCGTCCGGTCGCCGTTGGAGAAGCCAGTCGTGCCGCCGTTCGCTTGCTTCTGTGGGTGGGTTTTCCATCGTCGCTTTGGTGTTGACTCCGAACTCGCAGTTGTCAGTTGGGGAAGGTCGCTGGTGTCGTCTGGGCATCCAGATCCTCCACTAGCCGCTGCCGTGCCGTTTTCTGCCACTGCCGCCTTCCAATTTCAGTTTTGGTTTAGAAGCTTGGTGGCGAATTTTGGGTTGGACTCCTCGGTACGTTGTGCTCATTCATGTTCATCCATGTCTCACCGCAACCATGACGATGAAGGTGACGTTGAGCTTCCTGTCAGCAAGGAAGATGATGTGGTTGATGAGGACATGGAAGCCCTTCGGAGAGCCTATAAGCATGTTGGAGTTAATCCTGAGGATTACATTAATCCTAGGTTGTCATCACCTGTTGCCGGAGATGCTAATCCTAGTTCTGATTCTGATGATGTTGATGATTTTGAACTTCTTCGAAATATTCAGAACCGGTTCTCATGTGTGGCTGATGAGCAGCCGTTGAGTACTCTCCCACCAATGTCCCTAGACGAGGAGGAAGATGAATTTGAGATGCTTCGTTCAATTCAGCGGCGCTTTGCAGCGTACGAAAGTGATACTTTGAGCAATAAACCCAATCAGTTGTGTGACCATGTTGGGTCTTTGAAGATGGATTTTGACAACACAGCTGTTGAGAGTCAGACAGCCTCAAAAAGGCCATCCATGCTAGCCTTTGAAAAGGGAAGCTTGCCAAAAGCTGCATTGGCATTTATTGATGCCATCAAGAAAAATAGGTCCCAGCAGAAGTTTATTCGTAGTAAGATGATTCATCTTGAAGCTAGAATTGAGGAGAACAAAAAGCTCAGAAAACGTTTCAAAATTCTCAAAGATTTCCAGGGTTCATGTAAACGGAGAACAACCTGTGCACTGTCTCAAATGATAGATCCTCGAGTCCAGTTGATTTCAGCTGCAAAACCACAAGCAAAGGATTCATCAAAGAAGGACAAACGATTATCTGCAATGCATTATGGCCCAGCTGAGAATTCTCATGTTGCATGCTACAGAATGGCATTGATGAAGTTTCCTCGTGTAGATCGAAAAAAATGGTCCGTTGTAGAAAGGGAGAATCTAGGGAAGGGAATAAGACAGCAATTTCAGGAGATGGTGCTTCAGATTTCAGTGGATCAAATTAGTGGGCTACAAGGATTTTCTGCAGATTCAGATGATTTGGATAACATTCTTGCATCAATAAAAGACCTTGACATCACTCCTGAAAAGATTAGGGAATTTCTGCCAAAAGTTAATTGGGACAAATTGGCTTCCATGTATCTTCGGGGTCGCTCAGGGGCAGAATGTGAAGCGAGGTGGTTGAATTTCGAAGACCCCCTAATTAATCGGGATCCATGGACTACAAGTGAGGATAAGAATCTTTTGTTTACTATCCAACAGAAGGGGTTGAATAACTGGATTGAGATAGCAGTTTCGTCGGGTACAAATAGAACTCCTTTTCAGTGCTTGTCTCGGTATCAAAGGAGTTTAAACGCTTCCATATTAAAGAGGGAGTGGACCAAAGACGAGGATGATAAACTTCGAGCTGCTGTTGCTACATTTGGCCTGGGAGATTGGCAGGCAGTAGCTTCTACTTTGGAAGGACGAACTGGCCCACAGTGCTCTAATAGGTGGAAAAAATCCCTTGACCCAGCTAGGACAAAAAGAGGTCATTTCACTCCAGATGAAGACAGTCGCTTGAAAATTGCTGTACTGCTCTTTGGGCCTAAAAATTGGAACAAGAAAGCAGAATTTTTACCTGGTCGAAATCAAGTTCAATGCAGAGAAAGATGGTTTAATTGTTTAGATCCTTCCTTGAGAAGATGCGAATGGACAGAAGAGGAGGATTTAAGGCTGGAGATAGCAATTCGGGAACATGGATATAGCTGGGCTAAGGTAGCTGCATGTGTGCCATCACGTACAGATAATGATTGTCGGAGGAGATGGAAGAAGTTATTTCCCAATGAAGTTCCGTTACTCCAGGAAGCTAGAAAGATTCAGAAGGCTGCTCTTATTAGCAACTTTGTTGATAGGGAATCAGAGCGTCCTGCTCTTGGTCCTACTGACTTTCGACCCAGGCCAAACACAGATTTATTGTGTAATAGTGTTGATCCAAGACCTGCCCCGAAAAGAAATGTGAAGACAAGAAAGATGCCAGTGTCAAGGAATGAAAAGAGTGCTACTGGTGATGCTCCAAAGAAGAGGAAATCAAATTGCCAGAGGAATCAGGCTGATGCAACTGCTCAGGCGGGTATTGGAAATAATACCTCTTCTGTCCCAGAAGAGGTTAAATCTCTAAAGCCTCAAAGAAAACAAAATAGACATGGAGCTTATACCGCAGAAAGTATAGGGGTTCCGGAGCTATGTCCTAACAGCGAGTGGTGTGCTAAACAGAGTTTGGACACTCAGAGCCTTGGGGTGCAGCTTAATAGTAAGGAATCTGAGGGGACCAACAGCGACTGCATCGAGACTGTTGATGAGAATGGTATGGAGGTATTTGAGAACAAAGTTGCAGAGAAACTTTCTGAAAGAGATGTATGTTTTTCAGAACCAGAAGCAATTCAAAACTCAACCGGATCTTCTGGAGTCTCGGTATTGTCAGAAATGACTAATGACATGGATGAATACAATCCGTCTATCATTCCAGATACAACATTGTTGGCTAGTACTACTGTGGATGATCTCAAAGAATTGAAGAGGAAGAGTGTTGCAGACAGAGATCTGGATGACTGTAACAGTTTCTCGTTACCGTGCAGTGACTTGGAACTCAGGGCAATCGACAACGAAGGTGTGGACAGTTATTCCATGGATGAATTTACAGATAAAAGCCATGGGGTTTGCAAGCCCCCCCATACCAGAAGGAAGAAAAACAGCAAAACATCAAGTAAGAGCCAGGATCATTCCTTTGTTTCTTGTCAACAAGTGGAGTTGGAGAGGTTGGGGACAAATGAGCCTCGTCGTCATAATCAATCAAAAAAGAGAAAACATAACAGTACAAATACGAATCTGGAGGCAGTTGAGGAGGTTGATGACTGCACACTCGTGGGCTTTTTGCAAAAAAGATTGAAGAGGACGACGACAACAAATGACAAGAAAGTTGATTGCAGTTCAAGTACTCCCCTAGAAGTCGATACTGATGACAATGATCCTACCCTTGCCTCGTTTCTTAATAAATTAAAGAGAAAAAAGCATCAGCCGAGTAGTGGTGGTGAGTTAAACTAG 3489 44.17 MYSMELGFVEEKGELKLYNKKKEFFFFFLLLLPPRAAVFPSTGFSFSFFNRRCRQCCLPSPRSGCVVAVGLVRSPLEKPVVPPFACFCGWVFHRRFGVDSELAVVSWGRSLVSSGHPDPPLAAAVPFSATAAFQFQFWFRSLVANFGLDSSVRCAHSCSSMSHRNHDDEGDVELPVSKEDDVVDEDMEALRRAYKHVGVNPEDYINPRLSSPVAGDANPSSDSDDVDDFELLRNIQNRFSCVADEQPLSTLPPMSLDEEEDEFEMLRSIQRRFAAYESDTLSNKPNQLCDHVGSLKMDFDNTAVESQTASKRPSMLAFEKGSLPKAALAFIDAIKKNRSQQKFIRSKMIHLEARIEENKKLRKRFKILKDFQGSCKRRTTCALSQMIDPRVQLISAAKPQAKDSSKKDKRLSAMHYGPAENSHVACYRMALMKFPRVDRKKWSVVERENLGKGIRQQFQEMVLQISVDQISGLQGFSADSDDLDNILASIKDLDITPEKIREFLPKVNWDKLASMYLRGRSGAECEARWLNFEDPLINRDPWTTSEDKNLLFTIQQKGLNNWIEIAVSSGTNRTPFQCLSRYQRSLNASILKREWTKDEDDKLRAAVATFGLGDWQAVASTLEGRTGPQCSNRWKKSLDPARTKRGHFTPDEDSRLKIAVLLFGPKNWNKKAEFLPGRNQVQCRERWFNCLDPSLRRCEWTEEEDLRLEIAIREHGYSWAKVAACVPSRTDNDCRRRWKKLFPNEVPLLQEARKIQKAALISNFVDRESERPALGPTDFRPRPNTDLLCNSVDPRPAPKRNVKTRKMPVSRNEKSATGDAPKKRKSNCQRNQADATAQAGIGNNTSSVPEEVKSLKPQRKQNRHGAYTAESIGVPELCPNSEWCAKQSLDTQSLGVQLNSKESEGTNSDCIETVDENGMEVFENKVAEKLSERDVCFSEPEAIQNSTGSSGVSVLSEMTNDMDEYNPSIIPDTTLLASTTVDDLKELKRKSVADRDLDDCNSFSLPCSDLELRAIDNEGVDSYSMDEFTDKSHGVCKPPHTRRKKNSKTSSKSQDHSFVSCQQVELERLGTNEPRRHNQSKKRKHNSTNTNLEAVEEVDDCTLVGFLQKRLKRTTTTNDKKVDCSSSTPLEVDTDDNDPTLASFLNKLKRKKHQPSSGGELN 1162
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 13116172 13134120 - CrPI670011_10g009570.1 Cre10g0957 510259

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre10g0957 1162 CDD SANT 648 689 IPR001005 -
Cre10g0957 1162 SUPERFAMILY Homeodomain-like 531 587 IPR009057 -
Cre10g0957 1162 SMART sant 696 744 IPR001005 -
Cre10g0957 1162 SMART sant 644 693 IPR001005 -
Cre10g0957 1162 SMART sant 538 588 IPR001005 -
Cre10g0957 1162 SMART sant 438 535 IPR001005 -
Cre10g0957 1162 SMART sant 591 640 IPR001005 -
Cre10g0957 1162 MobiDBLite consensus disorder prediction 770 867 - -
Cre10g0957 1162 ProSiteProfiles Myb-like domain profile. 692 742 IPR001005 -
Cre10g0957 1162 ProSiteProfiles Myb-like domain profile. 587 638 IPR001005 -
Cre10g0957 1162 MobiDBLite consensus disorder prediction 205 224 - -
Cre10g0957 1162 MobiDBLite consensus disorder prediction 1026 1091 - -
Cre10g0957 1162 ProSiteProfiles SANT domain profile. 590 639 IPR017884 -
Cre10g0957 1162 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 587 642 IPR017930 -
Cre10g0957 1162 MobiDBLite consensus disorder prediction 830 852 - -
Cre10g0957 1162 Gene3D - 591 641 - -
Cre10g0957 1162 SUPERFAMILY Homeodomain-like 571 640 IPR009057 -
Cre10g0957 1162 CDD SANT 594 638 IPR001005 -
Cre10g0957 1162 CDD SANT 699 742 IPR001005 -
Cre10g0957 1162 MobiDBLite consensus disorder prediction 1115 1139 - -
Cre10g0957 1162 SUPERFAMILY Homeodomain-like 642 738 IPR009057 -
Cre10g0957 1162 Gene3D - 536 587 - -
Cre10g0957 1162 PANTHER SNRNA-ACTIVATING PROTEIN COMPLEX SUBUNIT 4 164 1153 IPR051575 GO:0000978(PANTHER)|GO:0001006(PANTHER)|GO:0019185(PANTHER)|GO:0042795(PANTHER)|GO:0042796(PANTHER)
Cre10g0957 1162 MobiDBLite consensus disorder prediction 806 829 - -
Cre10g0957 1162 Pfam Myb-like DNA-binding domain 592 636 IPR001005 -
Cre10g0957 1162 Pfam Myb-like DNA-binding domain 697 741 IPR001005 -
Cre10g0957 1162 Pfam Myb-like DNA-binding domain 539 584 IPR001005 -
Cre10g0957 1162 Pfam Myb-like DNA-binding domain 645 691 IPR001005 -
Cre10g0957 1162 Gene3D - 699 745 - -
Cre10g0957 1162 ProSiteProfiles Myb-like domain profile. 640 691 IPR001005 -
Cre10g0957 1162 MobiDBLite consensus disorder prediction 1120 1134 - -
Cre10g0957 1162 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 692 746 IPR017930 -
Cre10g0957 1162 Gene3D - 642 696 - -
Cre10g0957 1162 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 644 691 IPR017930 -
Cre10g0957 1162 ProSiteProfiles Myb-like domain profile. 534 586 IPR001005 -
Cre10g0957 1162 MobiDBLite consensus disorder prediction 1052 1067 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre10g0957 K09422 - - csv:101216287 1665.97
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre06g1837 Cre-Chr6:23259787 Cre10g0957 Cre-Chr10:13116172 1.30E-10 dispersed
Cre10g0957 Cre-Chr10:13116172 Cre10g0736 Cre-Chr10:7159592 1.00E-08 dispersed
Cre10g0957 Cre-Chr10:13116172 Cre06g2569 Cre-Chr6:33370192 1.10E-15 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cre06g1837 . 1 635 MYB-Related Transcription Factor Family AT1G09770 83.6 3.5e-298 1021.1
Cre06g1838 . 226 441 MYB-Related Transcription Factor Family AT1G09770 53.7 1.7e-50 198.4
Cre10g0957 . 322 774 MYB-Related Transcription Factor Family AT3G18100 57.8 4.5e-150 528.9
Cre10g0957 . 322 774 MYB-Related Transcription Factor Family AT3G18100 57.8 4.5e-150 528.9
Cre06g1837 . 1 635 MYB-Related Transcription Factor Family AT1G09770 83.6 3.5e-298 1021.1
Cre06g1838 . 226 441 MYB-Related Transcription Factor Family AT1G09770 53.7 1.7e-50 198.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002922 1 9 2 2 1 2 1 1 1 1 3 3 1 1 1 1 3 1 1 1 1 1 1 2 2 2 1 3 1 1 52
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54512 PF13921 Myb_DNA-bind_6 2.90E-11 CL0123 Cre TF