Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre10g0980 ATGCAGCTTCTTCTCCTTCTCTTTCTCCTTCTTCACCTCCATCTTCGTCTCTCCCTTTCTTCTCACTTGCCTGAATATCGCGCTCTTCTCTCTCTCAAGAGCTCGTTTTCCGATGACTCCCAATCGCCGCTCTCCACTTGGGACGCCGCCACTGCCCACTGTACTTGGACCGGAGTCACCTGCGATTTCCGTCGCCACGTCGTCGGCCTCGACCTTGCAGGATTGAATCTCTCTGGTACTCTCTCTCCTGACCTGGGGTCTCTCCGGTTTCTCTCTAATCTCTCTCTCCCGTCCAATCAGATTTCCGGCCCCATTCCGCCGGAGATCTCTGCCATGTCTACGCTTAAATACCTTAACCTCTCTAACAATCTCATTAATGGTACATTGCCCTTGCAACTCTCCTTGCTCAACAATCTGGAGGTTCTTGATTTGTATAACAATAATATGTCTGGGAACTTGCCGCTTGTGGTCATACAGTTGCCAAATCTCCGCCATTTGCATCTCGGGGGGAACTTCTTCTCCGGTGTGATTCCGCCGGGGTATGGAATGTGGCAGTTCATGGAGTATTTGGCGGTGTCTGGAAATGAGCTTCAAGGTCCGATCCCGCCGGAGATTGGTAATCTGACGAAGCTTCGTGAACTTTACATTGGGTATTATAATACCTACGACGGCGGTTTGCCGCCGGAAATTGGAAACTTATCGGAACTGGTTCGATTGGATGCTGCTAACTGTGGGTTGACGGGTGAGATCCCTCGCGAACTTGGAAAACTTAAGAAATTGGATACTCTGTTTCTTCAGGTGAACGGCTTTTCTGGGCCTTTGATTCCAGAACTTGGGAGCTTAACGGGATTGAAATCCATGGATTTATCTAACAACATTCTTGTTGGTGAGATTCCGGAGTCATTCTCTCAACTGAAGAACTTGACGCTTTTGCATCTTTTCAGGAATAAGCTTCATGGAGCTATTCCACAGTTCATCGGTGAGTTGCCGGAGCTGGAAGTGTTGCAGTTGTGGGAAAATAACTTCACTGGTTCTATTCCTTATAGTTTGGGGAAGAATGGGAAGCTCGTTGTTCTCGACATTTCATCAAACAAGTTGACTGGAACTTTGCCTCCCGATATGTGCAATGGAAATAAACTTCAAACTCTGATAACCCTCGGTAATTTCTTGTTTGGTCCAATCCCTGAATCTCTTGGTAGATGCGAGTCGTTGAGCCGTATTCGAATGGGGGAGAATTTTCTCAATGGTTCCATCCCGAACGGTCTCTTCGGTTTGCCTAATCTTTCTCAAGTTGAGTTGCAGAACAATTTTCTCACCGGAGAATTTCCAGTCACTGATTCCGTCTCGGCAAATCTCGGCCAAATTAGTCTCTCAAACAATCGGCTCTCGGGATCCCTTCCATCGATGGTTGGAAATTTCTCCGGCGTCCAGAAGCTTCTACTCGATGGGAACAAATTCTCCGGCCAAATCCCACCTGAAATCGGACGGTTACAGCAGCTGTCAAAGATTGATTTCAGCCACAACAAATTCTCCGGTCCAATCGCTCCGGAGATCAGCCAATGTAAGCTCTTAACCTTCGTCGATCTCAGTCGTAACGAACTCTCGGGTGAGATTCCGAATGAAATCACCACAATGAGGATATTGAACTATCTGAATCTCTCAAGAAATCACTTAATCGGAAGCGTTCCTGCTTCAATATCCTCAATGCAGAGCTTAACATCTGTTGATTTTTCATATAACAATCTCTCTGGTTTAGTTCCGGGCACGGGCCAGTTTAGCTACTTCAACTACACTTCATTTCTAGGCAACCCAGATCTCTGCGGTCCGTACTTAGGACCTTGCAAAAATGGGGTCGGCAATGGCACACAGCAGCCTCATTTAAAAGCCTCACTCTCTTCTTCTGTGAAACTTCTGCTTGTCATTGTCTTGCTCGTCTGCTCGATCGCATTTGCCATTGCAGCAATCATCAAAGCTCGGTCGCTAAAACGAGCAAGCGGGTCTCGAGCTTGGAAATTAACCGCATTCCAAAGACTAGATTTCACAGCAGATGACATTTTGGACTGTTTGAAAGAGGACAACATTATTGGGAAAGGAGGTGCTGGGATCGTTTACAAAGGTTTTATGCCGAGTGGCGATCACATCGCTGTGAAGAGACTGCCGGCGATGGGGCGAGGGTCGTCCCATGACCATGGATTCAATGCTGAGATACAGACTTTGGGGAGGATTAAACATCGTCACATTGTTAGATTATTGGGTTTCTGCTCAAACCATGAAACCAATCTTCTGGTTTATGAGTATATGCCTAATGGGAGTTTAGGGGAAGTTCTACACGGGAAGAAAGGTGGGCATTTGCAATGGGACACAAGGTATAAGATCGCCATTGAAGCTGCTAAAGGTCTTTGCTATTTACATCATGACTGTTCGCCATTGATTGTCCATCGAGATGTAAAATCAAACAATATTCTTCTGGATTCTGATTATGAAGCTCATGTTGCTGATTTTGGGCTTGCCAAGTTTCTTCAGGATTCAGGCACATCAGAGTGTATGTCCGCCATAGCTGGTTCTTACGGATACATAGCTCCAGAATATGCCTATACATTGAGAGTAGACGAGAAGAGTGATGTTTATAGCTTTGGAGTAGTACTCTTAGAACTGGTGAGTGGGCGGAAGCCTGTCGGAGAATTTGGCGATGGGGTTGACATAGTTCAGTGGGTCAGAAAAATGACTAGTCCCAACAATGAAGGGGTAGCGAAAATCATTGATCCACGGCTCTCCTCAGTCCCGCTGAATGAAGTAACTCATGTATTCTATGTAGCAATGCTATGCGTGGAAGACCAAGCCGTGGAGAGGCCAACAATGAGAGAAGTAGTTCAAATCCTCACAGAACTCCCAAGGCCACCAACTTCAAAACAAATAAACTCAAAAGAAGCCGAAGTAACAACCCTGCCGCTGCTGCCATCGTCCCCGGTGGTGGCATTAGATTCACCGAACAAAGCACAGCCACCACCTGATCTTCTGAGCATTTGA 3027 46.55 MQLLLLLFLLLHLHLRLSLSSHLPEYRALLSLKSSFSDDSQSPLSTWDAATAHCTWTGVTCDFRRHVVGLDLAGLNLSGTLSPDLGSLRFLSNLSLPSNQISGPIPPEISAMSTLKYLNLSNNLINGTLPLQLSLLNNLEVLDLYNNNMSGNLPLVVIQLPNLRHLHLGGNFFSGVIPPGYGMWQFMEYLAVSGNELQGPIPPEIGNLTKLRELYIGYYNTYDGGLPPEIGNLSELVRLDAANCGLTGEIPRELGKLKKLDTLFLQVNGFSGPLIPELGSLTGLKSMDLSNNILVGEIPESFSQLKNLTLLHLFRNKLHGAIPQFIGELPELEVLQLWENNFTGSIPYSLGKNGKLVVLDISSNKLTGTLPPDMCNGNKLQTLITLGNFLFGPIPESLGRCESLSRIRMGENFLNGSIPNGLFGLPNLSQVELQNNFLTGEFPVTDSVSANLGQISLSNNRLSGSLPSMVGNFSGVQKLLLDGNKFSGQIPPEIGRLQQLSKIDFSHNKFSGPIAPEISQCKLLTFVDLSRNELSGEIPNEITTMRILNYLNLSRNHLIGSVPASISSMQSLTSVDFSYNNLSGLVPGTGQFSYFNYTSFLGNPDLCGPYLGPCKNGVGNGTQQPHLKASLSSSVKLLLVIVLLVCSIAFAIAAIIKARSLKRASGSRAWKLTAFQRLDFTADDILDCLKEDNIIGKGGAGIVYKGFMPSGDHIAVKRLPAMGRGSSHDHGFNAEIQTLGRIKHRHIVRLLGFCSNHETNLLVYEYMPNGSLGEVLHGKKGGHLQWDTRYKIAIEAAKGLCYLHHDCSPLIVHRDVKSNNILLDSDYEAHVADFGLAKFLQDSGTSECMSAIAGSYGYIAPEYAYTLRVDEKSDVYSFGVVLLELVSGRKPVGEFGDGVDIVQWVRKMTSPNNEGVAKIIDPRLSSVPLNEVTHVFYVAMLCVEDQAVERPTMREVVQILTELPRPPTSKQINSKEAEVTTLPLLPSSPVVALDSPNKAQPPPDLLSI 1008
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 14300229 14303425 - CrPI670011_10g009800.1 Cre10g0980 510282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre10g0980 1008 Gene3D Phosphorylase Kinase; domain 1 657 766 - -
Cre10g0980 1008 SUPERFAMILY L domain-like 298 615 - -
Cre10g0980 1008 ProSiteProfiles Protein kinase domain profile. 689 963 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre10g0980 1008 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 9 962 IPR050647 -
Cre10g0980 1008 Gene3D Ribonuclease Inhibitor 345 618 IPR032675 -
Cre10g0980 1008 SUPERFAMILY RNI-like 69 391 - -
Cre10g0980 1008 Pfam Leucine rich repeat N-terminal domain 24 62 IPR013210 -
Cre10g0980 1008 ProSitePatterns Serine/Threonine protein kinases active-site signature. 811 823 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre10g0980 1008 Gene3D Transferase(Phosphotransferase) domain 1 767 981 - -
Cre10g0980 1008 Gene3D Ribonuclease Inhibitor 19 80 IPR032675 -
Cre10g0980 1008 Gene3D Ribonuclease Inhibitor 81 344 IPR032675 -
Cre10g0980 1008 Pfam Protein kinase domain 691 958 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre10g0980 1008 Pfam Leucine Rich Repeat 236 257 IPR001611 GO:0005515(InterPro)
Cre10g0980 1008 Pfam Leucine Rich Repeat 451 472 IPR001611 GO:0005515(InterPro)
Cre10g0980 1008 Pfam Leucine Rich Repeat 284 305 IPR001611 GO:0005515(InterPro)
Cre10g0980 1008 Pfam Leucine Rich Repeat 162 180 IPR001611 GO:0005515(InterPro)
Cre10g0980 1008 Pfam Leucine Rich Repeat 332 352 IPR001611 GO:0005515(InterPro)
Cre10g0980 1008 Pfam Leucine Rich Repeat 138 155 IPR001611 GO:0005515(InterPro)
Cre10g0980 1008 Pfam Leucine Rich Repeat 500 521 IPR001611 GO:0005515(InterPro)
Cre10g0980 1008 Pfam Leucine Rich Repeat 355 376 IPR001611 GO:0005515(InterPro)
Cre10g0980 1008 Pfam Leucine Rich Repeat 524 544 IPR001611 GO:0005515(InterPro)
Cre10g0980 1008 Pfam Leucine Rich Repeat 477 497 IPR001611 GO:0005515(InterPro)
Cre10g0980 1008 Pfam Leucine Rich Repeat 115 134 IPR001611 GO:0005515(InterPro)
Cre10g0980 1008 Pfam Leucine Rich Repeat 548 569 IPR001611 GO:0005515(InterPro)
Cre10g0980 1008 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 333 618 - -
Cre10g0980 1008 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 82 325 - -
Cre10g0980 1008 SMART serkin_6 689 959 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre10g0980 1008 SUPERFAMILY Protein kinase-like (PK-like) 685 960 IPR011009 -
Cre10g0980 1008 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 658 766 - -
Cre10g0980 1008 SMART LRR_typ_2 160 183 IPR003591 -
Cre10g0980 1008 SMART LRR_typ_2 281 305 IPR003591 -
Cre10g0980 1008 SMART LRR_typ_2 497 521 IPR003591 -
Cre10g0980 1008 SMART LRR_typ_2 354 377 IPR003591 -
Cre10g0980 1008 SMART LRR_typ_2 569 592 IPR003591 -
Cre10g0980 1008 SMART LRR_typ_2 329 353 IPR003591 -
Cre10g0980 1008 SMART LRR_typ_2 112 136 IPR003591 -
Cre10g0980 1008 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase 767 977 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre03g0925 Cre-Chr3:8021185 Cre10g0980 Cre-Chr10:14300229 1.30E-89 dispersed
Cre04g1420 Cre-Chr4:32992807 Cre10g0980 Cre-Chr10:14300229 1.50E-21 dispersed
Cre04g1421 Cre-Chr4:33009925 Cre10g0980 Cre-Chr10:14300229 1.70E-201 dispersed
Cre04g2203 Cre-Chr4:39133367 Cre10g0980 Cre-Chr10:14300229 4.40E-151 dispersed
Cre05g0452 Cre-Chr5:4123490 Cre10g0980 Cre-Chr10:14300229 6.20E-77 dispersed
Cre05g1985 Cre-Chr5:31939174 Cre10g0980 Cre-Chr10:14300229 1.10E-08 dispersed
Cre07g0500 Cre-Chr7:2793156 Cre10g0980 Cre-Chr10:14300229 8.90E-86 dispersed
Cre10g0888 Cre-Chr10:10211140 Cre10g0980 Cre-Chr10:14300229 1.40E-139 dispersed
Cre10g0980 Cre-Chr10:14300229 Cre11g1910 Cre-Chr11:30867215 2.00E-74 dispersed
Cre10g0980 Cre-Chr10:14300229 Cre10g0982 Cre-Chr10:14495930 1.20E-74 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64460 PF07714 PK_Tyr_Ser-Thr 2.10E-45 CL0016 Cre PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre10g0980 - - - 0.0