Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre10g0982 ATGCCATTTCTGAACCTTCCTCCATCTTCTCCCTACCTTCTTTTCTTCATCATTTTCTTCTTCTTCTTCTTCTTCTTCTTTCAGCTCTCTGTTTTCGCTCTCTTCTCCAACCACGATTACGATATTCTGATACGAATTAAAAACACCCATCTCGATGATCCCAAAGGCTGTTTGAACAATTGGGTTCCCAACCAAGCTCACAACCCCTGTAATTGGACTGGAATCACCTGCGATTCCACTAATTCCTCTGTTCTTTCCATCGATCTCAGTGATTCCGGCGTCTCCGGCGGATTTCCCTTCGAGTTTTGCCGGATTTCGTCTCTGAAATCCCTTTCTATCTCCAACTGCAGCGTCAATGGAACTTTACTCTCTCCTTCCTTCTCTCTCTGTTCTCACTTGCAACTCCTTAATCTTTCCGCTAACTTACTCGTCGGGAACTTGCCGGAGTTTTCCGCTGGTTTCACACAACTGAAAATTCTCGATCTCTCCGCCAACAATTTCACTGGTGATATTCCTCAAAGCTTCGGACAGTTACCGGCGCTGAGAGTGCTCCGTTTGTCTCAGAATCTGCTCAACGGCTCATTACCTTCTTTTCTGGGAAATCTCAGTGAGCTAACTGAAATGGCCATCGCTTATAATAATTTCAAACCCAATCGGTTACCACCTGAAATCGGAAACCTGAAGAAACTTGTAAACCTGTTTTTACCGTTTTCGAATTTCGTTGGACCAATTCCTGATTCCATTGGCAACCTTACTTTGCTTACTAATCTCGATTTATCTATCAATTCCATTTCGGGTCCGATCCCGGATTCAATCGGCGGACTAAGGAGCATAAAGAAGATTCAACTCTATAACAATCGAATCTCCGGTGAGTTGCCGGAGAGCATCGGAAATTTGACTACTCTGTTTTCGCTGGACATCTCGCAGAATAGTCTCACCGGGAAATTGCCGGAGAAAATTGCTGCTCTCCCTCTTCAATATCTGCATCTCAGTGACAATTTCCTCGACGGCGAGGTCCCGGAGAGCTTAGCTTCTAACCCAAATCTTCTCAATTTGAAATTGTTTAACAATAGCTTTTACGGCGAACTTCCCCGGAATTTGGGTCTGAATACTTATTTGAATGAGATTGATGTCTCTACCAACAATTTTGTGGGTGAAATTCCGAAATTTCTCTGCCATGGAAACCAACTTCAGAAAATCGTTTTATTCAACAACCGTCTCTCTGGAAATTTCCCAGAATCGTACGGTAGTTGCGATTCTCTGTATTATGTCAGAATTGAGAACAATCAACTTTCCGGGAAGGTACCGGACTCGTTCTGGAATCTCTCTAAGCTTACTAATATTCGGCTGGCGGAAAATCGATTTCAGGGCTCCATTCCTCCGGCGATAAGTGGCGTTCGTTTTCTCGAAGATTTGTTGATTTCCGGTAACAACTTCTCCGGCCAGTTACCGAAGGAGATTTGCAAATTGCGAGAGCTCGTCCGGTTAGACGTCAGCAGGAATAAATTCTCCGGCGGAGTTCCTTCCTGTATAACAGAGTTGCAGCATCTTCAAAAGCTCGACATGGAAGAAAACATGTTCACCGGAGAAATACCCAAATCGGTTTACACATGGAAAGAACTAACCGAGTTGAATCTATCGCACAATCAATTCATCGGTGAGATTCCGCCTCAACTCGGCGATTTACCAGTTCTAAAGTACTTGGATCTCTCTGCAAATTCACTCTCCGGCGAAATCCCCGAGGAATTGACGAAGCTTAAACTGGGTCAGTTCAATTTCTCCAACAACAAATTAACCGGAAAAGTTCCTTCCGGCTTCGACAACGAACTATTTGTCAGTAGCTTAATGGGTAATCCGGGTCTGTGTAGCCCGGATTTGAAGCCGCTGAACCGGTGCCCCAAACCCAAATCCATAAGTTTTTATGTTGTCATTGTTTTGTCGCTTATCGCTTTCGTTCTCATCGGCTCTCTCATCTGGGTAATCAAATTCAAGATGAATCTCTTCAAGAAATCGAAATCCCCATGGACGGTGACCAAGTTCCAACGTGTCGGGTTCGATGAAGAAGATGTAATTCCTCATCTAACCAAAGCAAATGTTATAGGGTCAGGTGGGTCAGGTACTGTCTTCAAGGTTGATCTAAAAATGGGTCAGACCATCGCAGTGAAGAACCTATGGGGTGGCCACAATAAATTGGATACAGAATTGGTTTTCCAGTCTGAAGTTGAGACATTGGGTCGGATCCGGCATGCCAATATTGTGAAGTTGCTCTTAAGTTGCAGCAATGGTGAAGGAAGTAGGATTCTTGTGTACGAGTACATGGAAAATGGTAGTTTGGGAGATGTCCTACACGAACACAAATCCGAAGCTTTGTCTGATTGGTCAAAACGATACAACATCGCCCTCGGAGCAGCCCAAGGATTAGCTTACTTGCACCATGACTGCGTCCCTCCGATAATCCATCGCGATGTGAAGAGCAACAACATTCTCTTGGATGGAGAATTTCAACCTCGGGTGGCTGACTTCGGTTTGGCAAAGTCAATGCAACGACAGGCAGAAGCAAATGATGGTAATGTCATGTCTCGCATTGCTGGCTCCTATGGTTACATTGCCCCTGAGTATGGATATACTATGAAGGTGACAGAGAAGAGCGATGTGTATAGCTTTGGAGTGGTGTTGATGGAGCTAGTGACAGGGAAGCGACCGAACGATGCGTGTTTTAGGGAGAATGAAGATATTGTGAAATGGGTGACAAAGGCTGCTTTGTCCGAGGGAAAAGAAGAGAAACGGTTGAGTTTGAATGAGATTATTGATGAAAAGTTGGATCTAAGGACATGTGAAGTAGAAGAGATAGTCAAGATTTTGGATGTGGCAGTGCTTTGTACTTCTGCTTTGCCTCTCAACAGACCATCCATGAGAAGAGTGGTTGAGCTCATAAGGGACACCAAATTGCCTCATTCCAAGTCATGA 2967 44.46 MPFLNLPPSSPYLLFFIIFFFFFFFFFQLSVFALFSNHDYDILIRIKNTHLDDPKGCLNNWVPNQAHNPCNWTGITCDSTNSSVLSIDLSDSGVSGGFPFEFCRISSLKSLSISNCSVNGTLLSPSFSLCSHLQLLNLSANLLVGNLPEFSAGFTQLKILDLSANNFTGDIPQSFGQLPALRVLRLSQNLLNGSLPSFLGNLSELTEMAIAYNNFKPNRLPPEIGNLKKLVNLFLPFSNFVGPIPDSIGNLTLLTNLDLSINSISGPIPDSIGGLRSIKKIQLYNNRISGELPESIGNLTTLFSLDISQNSLTGKLPEKIAALPLQYLHLSDNFLDGEVPESLASNPNLLNLKLFNNSFYGELPRNLGLNTYLNEIDVSTNNFVGEIPKFLCHGNQLQKIVLFNNRLSGNFPESYGSCDSLYYVRIENNQLSGKVPDSFWNLSKLTNIRLAENRFQGSIPPAISGVRFLEDLLISGNNFSGQLPKEICKLRELVRLDVSRNKFSGGVPSCITELQHLQKLDMEENMFTGEIPKSVYTWKELTELNLSHNQFIGEIPPQLGDLPVLKYLDLSANSLSGEIPEELTKLKLGQFNFSNNKLTGKVPSGFDNELFVSSLMGNPGLCSPDLKPLNRCPKPKSISFYVVIVLSLIAFVLIGSLIWVIKFKMNLFKKSKSPWTVTKFQRVGFDEEDVIPHLTKANVIGSGGSGTVFKVDLKMGQTIAVKNLWGGHNKLDTELVFQSEVETLGRIRHANIVKLLLSCSNGEGSRILVYEYMENGSLGDVLHEHKSEALSDWSKRYNIALGAAQGLAYLHHDCVPPIIHRDVKSNNILLDGEFQPRVADFGLAKSMQRQAEANDGNVMSRIAGSYGYIAPEYGYTMKVTEKSDVYSFGVVLMELVTGKRPNDACFRENEDIVKWVTKAALSEGKEEKRLSLNEIIDEKLDLRTCEVEEIVKILDVAVLCTSALPLNRPSMRRVVELIRDTKLPHSKS 988
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 14495930 14498979 + CrPI670011_10g009820.1 Cre10g0982 510284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre10g0982 988 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 773 988 - -
Cre10g0982 988 Pfam Leucine Rich Repeat 420 442 IPR001611 GO:0005515(InterPro)
Cre10g0982 988 Pfam Leucine Rich Repeat 541 562 IPR001611 GO:0005515(InterPro)
Cre10g0982 988 Pfam Leucine Rich Repeat 565 586 IPR001611 GO:0005515(InterPro)
Cre10g0982 988 Pfam Leucine Rich Repeat 325 345 IPR001611 GO:0005515(InterPro)
Cre10g0982 988 Pfam Leucine Rich Repeat 469 490 IPR001611 GO:0005515(InterPro)
Cre10g0982 988 Pfam Leucine rich repeat N-terminal domain 37 78 IPR013210 -
Cre10g0982 988 ProSitePatterns Serine/Threonine protein kinases active-site signature. 818 830 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre10g0982 988 SUPERFAMILY L domain-like 373 628 - -
Cre10g0982 988 Gene3D Ribonuclease Inhibitor 36 217 IPR032675 -
Cre10g0982 988 ProSiteProfiles Leucine-rich repeat profile. 540 563 IPR001611 GO:0005515(InterPro)
Cre10g0982 988 SMART serkin_6 694 944 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre10g0982 988 Pfam Leucine rich repeat 254 312 IPR001611 GO:0005515(InterPro)
Cre10g0982 988 Pfam Leucine rich repeat 131 191 IPR001611 GO:0005515(InterPro)
Cre10g0982 988 ProSitePatterns Protein kinases ATP-binding region signature. 700 722 IPR017441 GO:0005524(InterPro)
Cre10g0982 988 SUPERFAMILY RNI-like 82 392 - -
Cre10g0982 988 SUPERFAMILY Protein kinase-like (PK-like) 687 977 IPR011009 -
Cre10g0982 988 FunFam Leucine-rich repeat receptor-like protein kinase 36 197 - -
Cre10g0982 988 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 22 978 IPR050647 -
Cre10g0982 988 Gene3D Ribonuclease Inhibitor 323 639 IPR032675 -
Cre10g0982 988 FunFam Receptor-like protein kinase HSL1 324 629 - -
Cre10g0982 988 Gene3D Phosphorylase Kinase; domain 1 669 772 - -
Cre10g0982 988 Gene3D Ribonuclease Inhibitor 218 322 IPR032675 -
Cre10g0982 988 Gene3D Transferase(Phosphotransferase) domain 1 773 987 - -
Cre10g0982 988 ProSiteProfiles Protein kinase domain profile. 694 983 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre10g0982 988 Pfam Protein kinase domain 696 904 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre10g0982 988 FunFam Leucine-rich receptor-like protein kinase family protein 220 318 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre04g1942 Cre-Chr4:36928772 Cre10g0982 Cre-Chr10:14495930 1.10E-91 dispersed
Cre08g1149 Cre-Chr8:24711175 Cre10g0982 Cre-Chr10:14495930 4.80E-84 dispersed
Cre10g0982 Cre-Chr10:14495930 Cre11g1910 Cre-Chr11:30867215 1.90E-72 dispersed
Cre10g0980 Cre-Chr10:14300229 Cre10g0982 Cre-Chr10:14495930 1.20E-74 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64461 PF00069 Pkinase 8.90E-43 CL0016 Cre PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre10g0982 - - - 0.0