Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre10g0999 ATGGGTTTGGATGATTTTTGTCAAACAGGCTTGGTGTTGGGCTTAGGGCTCTCTAATGATCAAAGGTTGAAGAAGAAGCCTGCACCTTGCTCCTCTAGTTCCCTTGATTTTGAGCCTTGTGCTTTGACTTTGGGATTTTCCGGCAGTGGAGGCGGCAGCGAAACTCACCAGAAAGTTATTGATGTCAACAACAAGATGATGATTAATAACAACAACTCTGATGTGGGTGTTCATCATTTGCATCGCCAAGAAACTTCCACTCATAGCAGCAGCGCTGTTTGTTCTTCCTTCTCCGGCGGCGGTAGGGTTAAAAGGGAGAGAGATCTTAGCAGCGAAGAAGTTGAATTGGACAGACTTTCTTCTAGAGTTAGTGATGAAGATGAAGATGGTTCTAATGCTAGAAAGAAACTTAGGCTCTCTAAACAACAAGCCGCTCTCTTGGAACAAAGTTTCAAGCAAAATAGCACCCTCAATCCTAAGCAAAAACAAGCCTTGGCGAGACAGCTAAATCTACGGCCACGACAAGTTGAAGTATGGTTTCAAAATAGGAGAGCACGAACAAAACTGAAACAAACAGAAGTAGACTGTGAGTTATTGAAGAAGTGTTGTGAGACGTTGACAGATGAAAATAGAAGGCTACAAAAGGAGCTTCAAGAATTGAAGACGTTAAAGCTGGCTCAACCACTATACATGCAGATGCCGGCGGCGACATTAACTATATGCCCCTCCTGCGAAAGGCTCGGCGGCAGCGGCAGCGCTTCCAAACCCAAATTTTCAATGGCTCCTAAGCCTCACTTTTACAACCCCTTCTCCAATCCTTCCGCCGCATGTTAG 834 44.96 MGLDDFCQTGLVLGLGLSNDQRLKKKPAPCSSSSLDFEPCALTLGFSGSGGGSETHQKVIDVNNKMMINNNNSDVGVHHLHRQETSTHSSSAVCSSFSGGGRVKRERDLSSEEVELDRLSSRVSDEDEDGSNARKKLRLSKQQAALLEQSFKQNSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQTEVDCELLKKCCETLTDENRRLQKELQELKTLKLAQPLYMQMPAATLTICPSCERLGGSGSASKPKFSMAPKPHFYNPFSNPSAAC 277
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 17069352 17070416 - CrPI670011_10g009990.1 Cre10g0999 510301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre10g0999 277 ProSitePatterns 'Homeobox' domain signature. 165 188 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Cre10g0999 277 CDD homeodomain 134 191 IPR001356 GO:0003677(InterPro)
Cre10g0999 277 Pfam Homeodomain 134 188 IPR001356 GO:0003677(InterPro)
Cre10g0999 277 FunFam Homeobox-leucine zipper protein 18 120 195 - -
Cre10g0999 277 SMART HOX_1 132 194 IPR001356 GO:0003677(InterPro)
Cre10g0999 277 Pfam Homeobox associated leucine zipper 190 223 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Cre10g0999 277 SMART halz 190 233 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Cre10g0999 277 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 10 269 IPR050762 -
Cre10g0999 277 Gene3D - 138 188 - -
Cre10g0999 277 MobiDBLite consensus disorder prediction 80 111 - -
Cre10g0999 277 ProSiteProfiles 'Homeobox' domain profile. 130 190 IPR001356 GO:0003677(InterPro)
Cre10g0999 277 SUPERFAMILY Homeodomain-like 122 191 IPR009057 -
Cre10g0999 277 Coils Coil 196 226 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre04g1411 Cre-Chr4:32939901 Cre10g0999 Cre-Chr10:17069352 4.80E-76 dispersed
Cre05g1931 Cre-Chr5:31485539 Cre10g0999 Cre-Chr10:17069352 1.30E-52 dispersed
Cre06g2259 Cre-Chr6:30499626 Cre10g0999 Cre-Chr10:17069352 9.80E-40 dispersed
Cre10g0999 Cre-Chr10:17069352 Cre10g1878 Cre-Chr10:33370003 2.10E-50 dispersed
Cre10g0999 Cre-Chr10:17069352 Cre09g0360 Cre-Chr9:3557224 3.30E-51 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54516 PF00046 Homeodomain 5.20E-16 CL0123 Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre10g0999 K09338 - csv:101205848 372.859