Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre10g1059 ATGCAAGAATACCTCCAAAAGATGCTCCCAAATACAAAGCGCGAATGTTACCTGCATTTAATCTCTGATGGGAAGGTAATATTGGAAGGGAAATCTAACTTCGGAAAAAAACAGCCTTTATTGGATGCTATTACTACTGAATCTCTGAGGATGGGTGATAGTTTTAATCAATGGATGAGTAGAGAACTAGGAGATGTGAAGGAGGCAAGCATGCAGTCCAATTCTGGAACATACTGGAATAGTGTAGAAAATGACGTTGGACAGCTCTTTCGCATTATTGATTTTTCACCAAGCTGGGCATATGAAGGTTCTGAAATCAAGGTTTTGGTATCAGGGAAGTTCTTGAAGAGTCCACATGAAGTGGAAAATCTTAAATGGTGTTGCATGTTTGGAGAGGTGGAAGTACCAGCTGAAGTTATAGCAGATGGTGTATTGCGATGTTTTACTCCCATACACAAGGCTGGGAAGGTTCCCTTTTATGTTACACGTTCCAATAGATTAGCTTGTAGTGAAGTACGAGACTTTGAATACCGAGTTAAGTGCATACAAGATGTGGATGTAATGTACGATCATATTATCAAAAATCAAGCACTTGTTTTGCGTTTTGTAAAATTAATATGCCTGAGCTGTTCAGACACTTTGATTGCTGATCCAAACAGCTCAAGTGACAGATCTGACTATAATAAAATCCGCGAATTGCTAGAGGTTGACAATAGTGAGTGGGATCAGTTGATAAAGCCTAGATGGGATGAGAGTGTTTCCCTTGAAAGCGCAAAAGAATTGCTGCTTCAAAGGCTACTTAAAGAGAAGCTACACGTATGGCTATTGCAAAAAGTCAGGGAAGGTGGGAGAGGCCCTAGCGTATTGGATGAGCAAGGTCAAGGCGTGATACATTTTGCTGCTGCACTTAACTATGATTGGGCCATTCTACCAGCATTAGTTGCTGGTATAAATGTCAATTTTCGTGATGCAAATGGATGGACAGCACTACATTGGGCTGCATTCTTTGGCAGAGAGCGTACAGTCGCTGCCCTCATCTCTCTGGGTGCAGCTCCTGGAGCACTGGCAGATCCAAGCCTCAAGTATCCATCTGGCAGAACTCCTGCTGATTTAGCATCCTCAAATGGGCACAAAGGAATTGCTGGTTATCTTGCAGAGTCGGTGCTAAGCGCACACTTGGAATCTCTGAATTTTGATAATCAAGAAAGTAAGGCTGCAGATACTTGTGGAGAAAAAGCAGTACAAACAGCTGCTGAGCGTGTCCCCACTCCGCACGAGGGCAATGATATGTATACATTGTCCCTCAAGGATTCATTAGCAGCCATATCTAATGCTACCCAAGCTGCTGCTCGTATTCACGAGGTTATGAGGGTGCAGTCCTTCCAAAGAAAGCAATTGGAGGTGAACGATAAATTCGACGTTTCAAATGATCAGGCTTTTTCACTTTTACCAGTTAAGAGACGTAATCCGGGATCACATGATGATGAGCATGCTGCTGCCATTCGCATACAAAACAAGTTCCGCAGTTGGAAGGGCAGAAAAGATTTTCTAATAGTCCGACAGAGAATTGTTAAAATTCAGGCCCATGCAAGAGGCCATCAGGTGCGAAACAACTATCGGAAAATTTTGTGGTCAGTGGGAATTTTGGAGAAGGTTATTTTGCGTTGGAGAAGAAAAGGAAGTGGTTTACGAGGATTTAGGCCAGAAGCAACTGCTGAGGACTGCAGTAGGCCAAATACATCGTTGACAGAGGATGATGACGACTTTTTAAAACAAGGCAGAAAGCAAATAGAAGAAAGGTTGCAGAAGGCTCTTGCTAGAGTTAAGTCTATGGTGCAATATCCTGAGGCAAGGGATCAATATCGCAGGCTGTTAAATGTTGTCATGGAGATGCAAGAAATAAAGTGTTCAGGTGAAAGATGGTGTTCTAGACAATGTAGATGA 1944 42.59 MQEYLQKMLPNTKRECYLHLISDGKVILEGKSNFGKKQPLLDAITTESLRMGDSFNQWMSRELGDVKEASMQSNSGTYWNSVENDVGQLFRIIDFSPSWAYEGSEIKVLVSGKFLKSPHEVENLKWCCMFGEVEVPAEVIADGVLRCFTPIHKAGKVPFYVTRSNRLACSEVRDFEYRVKCIQDVDVMYDHIIKNQALVLRFVKLICLSCSDTLIADPNSSSDRSDYNKIRELLEVDNSEWDQLIKPRWDESVSLESAKELLLQRLLKEKLHVWLLQKVREGGRGPSVLDEQGQGVIHFAAALNYDWAILPALVAGINVNFRDANGWTALHWAAFFGRERTVAALISLGAAPGALADPSLKYPSGRTPADLASSNGHKGIAGYLAESVLSAHLESLNFDNQESKAADTCGEKAVQTAAERVPTPHEGNDMYTLSLKDSLAAISNATQAAARIHEVMRVQSFQRKQLEVNDKFDVSNDQAFSLLPVKRRNPGSHDDEHAAAIRIQNKFRSWKGRKDFLIVRQRIVKIQAHARGHQVRNNYRKILWSVGILEKVILRWRRKGSGLRGFRPEATAEDCSRPNTSLTEDDDDFLKQGRKQIEERLQKALARVKSMVQYPEARDQYRRLLNVVMEMQEIKCSGERWCSRQCR 647
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 20909691 20913410 - CrPI670011_10g010590.1 Cre10g1059 510361

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre10g1059 647 SMART ANK_2a 364 393 IPR002110 GO:0005515(InterPro)
Cre10g1059 647 SMART ANK_2a 325 354 IPR002110 GO:0005515(InterPro)
Cre10g1059 647 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 496 546 IPR027417 -
Cre10g1059 647 SMART iq_5 518 540 IPR000048 GO:0005515(InterPro)
Cre10g1059 647 SMART iq_5 495 517 IPR000048 GO:0005515(InterPro)
Cre10g1059 647 ProSiteProfiles Ankyrin repeat profile. 325 357 IPR002110 GO:0005515(InterPro)
Cre10g1059 647 Pfam Ankyrin repeats (3 copies) 298 387 IPR002110 GO:0005515(InterPro)
Cre10g1059 647 Gene3D - 216 388 IPR036770 -
Cre10g1059 647 SUPERFAMILY Ankyrin repeat 278 386 IPR036770 -
Cre10g1059 647 FunFam Calmodulin-binding transcription activator 2 495 543 - -
Cre10g1059 647 SUPERFAMILY E set domains 92 178 IPR014756 -
Cre10g1059 647 ProSiteProfiles IQ motif profile. 520 543 - -
Cre10g1059 647 ProSiteProfiles Ankyrin repeat region circular profile. 325 350 - -
Cre10g1059 647 Pfam IQ calmodulin-binding motif 497 516 IPR000048 GO:0005515(InterPro)
Cre10g1059 647 Pfam IQ calmodulin-binding motif 521 540 IPR000048 GO:0005515(InterPro)
Cre10g1059 647 Gene3D - 494 543 - -
Cre10g1059 647 Gene3D Immunoglobulins 85 181 IPR013783 -
Cre10g1059 647 FunFam Calmodulin-binding transcription activator 2 85 181 - -
Cre10g1059 647 ProSiteProfiles IQ motif profile. 496 525 - -
Cre10g1059 647 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 33 630 - GO:0003690(PANTHER)|GO:0003712(PANTHER)|GO:0005634(PANTHER)|GO:0006357(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre10g1059 K21596 - - vvi:100247418 764.607
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre06g1228 Cre-Chr6:6152604 Cre10g1059 Cre-Chr10:20909691 5.50E-79 dispersed
Cre09g1559 Cre-Chr9:31741688 Cre10g1059 Cre-Chr10:20909691 5.00E-143 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cre10g1059 . 36 635 CAMTA Transcription Factor Family AT2G22300 53.1 7.5e-167 585.1
Cre09g1559 . 1 1101 CAMTA Transcription Factor Family AT5G64220 54.0 5.6e-277 951.0
Cre10g1060 . 76 212 CAMTA Transcription Factor Family AT5G64220 71.7 3.5e-53 207.6
Cre06g0984 . 6 924 CAMTA Transcription Factor Family AT1G67310 52.3 2.2e-254 875.9
Cre06g1228 . 34 906 CAMTA Transcription Factor Family AT3G16940 55.1 8.3e-260 893.6
Cre06g1228 . 11 631 CAMTA Transcription Factor Family AT4G16150 53.8 4.9e-192 668.7
Cre09g1559 . 1 1101 CAMTA Transcription Factor Family AT5G64220 54.0 5.6e-277 951.0
Cre10g1060 . 76 212 CAMTA Transcription Factor Family AT5G64220 71.7 3.5e-53 207.6
Cre10g1059 . 36 635 CAMTA Transcription Factor Family AT2G22300 53.1 7.5e-167 585.1
Cre06g0984 . 6 924 CAMTA Transcription Factor Family AT1G67310 52.3 2.2e-254 875.9
Cre06g1228 . 11 631 CAMTA Transcription Factor Family AT4G16150 53.8 4.9e-192 668.7
Cre06g1228 . 34 906 CAMTA Transcription Factor Family AT3G16940 55.1 8.3e-260 893.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006128 0 6 0 0 0 2 1 1 2 0 1 1 1 0 0 1 2 2 1 2 0 1 1 1 3 0 1 3 5 0 38