Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre10g1059 ATGCAAGAATACCTCCAAAAGATGCTCCCAAATACAAAGCGCGAATGTTACCTGCATTTAATCTCTGATGGGAAGGTAATATTGGAAGGGAAATCTAACTTCGGAAAAAAACAGCCTTTATTGGATGCTATTACTACTGAATCTCTGAGGATGGGTGATAGTTTTAATCAATGGATGAGTAGAGAACTAGGAGATGTGAAGGAGGCAAGCATGCAGTCCAATTCTGGAACATACTGGAATAGTGTAGAAAATGACGTTGGACAGCTCTTTCGCATTATTGATTTTTCACCAAGCTGGGCATATGAAGGTTCTGAAATCAAGGTTTTGGTATCAGGGAAGTTCTTGAAGAGTCCACATGAAGTGGAAAATCTTAAATGGTGTTGCATGTTTGGAGAGGTGGAAGTACCAGCTGAAGTTATAGCAGATGGTGTATTGCGATGTTTTACTCCCATACACAAGGCTGGGAAGGTTCCCTTTTATGTTACACGTTCCAATAGATTAGCTTGTAGTGAAGTACGAGACTTTGAATACCGAGTTAAGTGCATACAAGATGTGGATGTAATGTACGATCATATTATCAAAAATCAAGCACTTGTTTTGCGTTTTGTAAAATTAATATGCCTGAGCTGTTCAGACACTTTGATTGCTGATCCAAACAGCTCAAGTGACAGATCTGACTATAATAAAATCCGCGAATTGCTAGAGGTTGACAATAGTGAGTGGGATCAGTTGATAAAGCCTAGATGGGATGAGAGTGTTTCCCTTGAAAGCGCAAAAGAATTGCTGCTTCAAAGGCTACTTAAAGAGAAGCTACACGTATGGCTATTGCAAAAAGTCAGGGAAGGTGGGAGAGGCCCTAGCGTATTGGATGAGCAAGGTCAAGGCGTGATACATTTTGCTGCTGCACTTAACTATGATTGGGCCATTCTACCAGCATTAGTTGCTGGTATAAATGTCAATTTTCGTGATGCAAATGGATGGACAGCACTACATTGGGCTGCATTCTTTGGCAGAGAGCGTACAGTCGCTGCCCTCATCTCTCTGGGTGCAGCTCCTGGAGCACTGGCAGATCCAAGCCTCAAGTATCCATCTGGCAGAACTCCTGCTGATTTAGCATCCTCAAATGGGCACAAAGGAATTGCTGGTTATCTTGCAGAGTCGGTGCTAAGCGCACACTTGGAATCTCTGAATTTTGATAATCAAGAAAGTAAGGCTGCAGATACTTGTGGAGAAAAAGCAGTACAAACAGCTGCTGAGCGTGTCCCCACTCCGCACGAGGGCAATGATATGTATACATTGTCCCTCAAGGATTCATTAGCAGCCATATCTAATGCTACCCAAGCTGCTGCTCGTATTCACGAGGTTATGAGGGTGCAGTCCTTCCAAAGAAAGCAATTGGAGGTGAACGATAAATTCGACGTTTCAAATGATCAGGCTTTTTCACTTTTACCAGTTAAGAGACGTAATCCGGGATCACATGATGATGAGCATGCTGCTGCCATTCGCATACAAAACAAGTTCCGCAGTTGGAAGGGCAGAAAAGATTTTCTAATAGTCCGACAGAGAATTGTTAAAATTCAGGCCCATGCAAGAGGCCATCAGGTGCGAAACAACTATCGGAAAATTTTGTGGTCAGTGGGAATTTTGGAGAAGGTTATTTTGCGTTGGAGAAGAAAAGGAAGTGGTTTACGAGGATTTAGGCCAGAAGCAACTGCTGAGGACTGCAGTAGGCCAAATACATCGTTGACAGAGGATGATGACGACTTTTTAAAACAAGGCAGAAAGCAAATAGAAGAAAGGTTGCAGAAGGCTCTTGCTAGAGTTAAGTCTATGGTGCAATATCCTGAGGCAAGGGATCAATATCGCAGGCTGTTAAATGTTGTCATGGAGATGCAAGAAATAAAGTGTTCAGGTGAAAGATGGTGTTCTAGACAATGTAGATGA 1944 42.59 MQEYLQKMLPNTKRECYLHLISDGKVILEGKSNFGKKQPLLDAITTESLRMGDSFNQWMSRELGDVKEASMQSNSGTYWNSVENDVGQLFRIIDFSPSWAYEGSEIKVLVSGKFLKSPHEVENLKWCCMFGEVEVPAEVIADGVLRCFTPIHKAGKVPFYVTRSNRLACSEVRDFEYRVKCIQDVDVMYDHIIKNQALVLRFVKLICLSCSDTLIADPNSSSDRSDYNKIRELLEVDNSEWDQLIKPRWDESVSLESAKELLLQRLLKEKLHVWLLQKVREGGRGPSVLDEQGQGVIHFAAALNYDWAILPALVAGINVNFRDANGWTALHWAAFFGRERTVAALISLGAAPGALADPSLKYPSGRTPADLASSNGHKGIAGYLAESVLSAHLESLNFDNQESKAADTCGEKAVQTAAERVPTPHEGNDMYTLSLKDSLAAISNATQAAARIHEVMRVQSFQRKQLEVNDKFDVSNDQAFSLLPVKRRNPGSHDDEHAAAIRIQNKFRSWKGRKDFLIVRQRIVKIQAHARGHQVRNNYRKILWSVGILEKVILRWRRKGSGLRGFRPEATAEDCSRPNTSLTEDDDDFLKQGRKQIEERLQKALARVKSMVQYPEARDQYRRLLNVVMEMQEIKCSGERWCSRQCR 647
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 20909691 20913410 - CrPI670011_10g010590.1 Cre10g1059 510361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre10g1059 647 SMART ANK_2a 364 393 IPR002110 GO:0005515(InterPro)
Cre10g1059 647 SMART ANK_2a 325 354 IPR002110 GO:0005515(InterPro)
Cre10g1059 647 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 496 546 IPR027417 -
Cre10g1059 647 SMART iq_5 518 540 IPR000048 GO:0005515(InterPro)
Cre10g1059 647 SMART iq_5 495 517 IPR000048 GO:0005515(InterPro)
Cre10g1059 647 ProSiteProfiles Ankyrin repeat profile. 325 357 IPR002110 GO:0005515(InterPro)
Cre10g1059 647 Pfam Ankyrin repeats (3 copies) 298 387 IPR002110 GO:0005515(InterPro)
Cre10g1059 647 Gene3D - 216 388 IPR036770 -
Cre10g1059 647 SUPERFAMILY Ankyrin repeat 278 386 IPR036770 -
Cre10g1059 647 FunFam Calmodulin-binding transcription activator 2 495 543 - -
Cre10g1059 647 SUPERFAMILY E set domains 92 178 IPR014756 -
Cre10g1059 647 ProSiteProfiles IQ motif profile. 520 543 - -
Cre10g1059 647 ProSiteProfiles Ankyrin repeat region circular profile. 325 350 - -
Cre10g1059 647 Pfam IQ calmodulin-binding motif 497 516 IPR000048 GO:0005515(InterPro)
Cre10g1059 647 Pfam IQ calmodulin-binding motif 521 540 IPR000048 GO:0005515(InterPro)
Cre10g1059 647 Gene3D - 494 543 - -
Cre10g1059 647 Gene3D Immunoglobulins 85 181 IPR013783 -
Cre10g1059 647 FunFam Calmodulin-binding transcription activator 2 85 181 - -
Cre10g1059 647 ProSiteProfiles IQ motif profile. 496 525 - -
Cre10g1059 647 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 33 630 - GO:0003690(PANTHER)|GO:0003712(PANTHER)|GO:0005634(PANTHER)|GO:0006357(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre06g1228 Cre-Chr6:6152604 Cre10g1059 Cre-Chr10:20909691 5.50E-79 dispersed
Cre09g1559 Cre-Chr9:31741688 Cre10g1059 Cre-Chr10:20909691 5.00E-143 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre10g1059 K21596 - vvi:100247418 764.607