Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre10g1060 ATGAAACGATTTGCTAACAAGCAATCAACCTTATTTGATCATCAGAATCAAATCAATGGCATTGAAAATCAGTTGCTGTTAAGATGTGGAGAGATTAAGCGTTGGGAATCCGATCAATGCACCAACTATTCTCAATTTTCCTTCAAACCAGTCGTCGGCAAATGCTTTGACTTTATTCTACTCAAATTCAGCTCGTCTTCAATCGAGCACCAGAACATGGCAGAAATAGATATTGAACGAATCCTTTTAGAAGCAAAACATCGATGGCTACGCCCGGCTGAAATATGTGAAATTCTCAAAAACTACGATAAATTTTCTATTGCTTCAGACCCTGCTAATATGCCTCCAAGTGGTTCACTTTTTCTTTATGATCGAAAGGTGGTAAGATACTTCCGCAAGGATGGACATAATTGGAGGAAGAAGAAAGGAAAGGCGGTAAAGGAAGCTCACGAGAGGCTCAAGGCTGGAAGTGTGTATGTGCTGAATTGCTACTATGCACATGGGGAAGAAAATGAAAATTTTCAGAGGCGCACTTATTGGATGCTGGAAGAGGATCTATCAAACATTGTTCTTGTCCACTATCGGGAAGTGCAGAGCAGTAGAGGAAATTTCAATCGTAATAGGGGGACTGATGAAGCTGCTCTATTCTCTCGAGAATTTGAAGATACTAAGAACCGTCCAGAAATGGGCGCTTCTAACTCCTCTAGTTTTCATCCATCTAATTATAAAATGCTTTCACAAACTGCTGAAATTAGCCTGAACAGTGCCCAGGTATCAGAATATGAAGATGCTGAATCAGAATACGGTAACCGAGAAAGTACTGTTTTCCATTCTTTTCTTGGATTACAACAGTTGAAAATGGAGAGTAATAGTGCTGATCTCTGTGATTCGAAGTATTCTATATCATTATCAGATATTTATCAAGAAGACTTTACAGCCTTTGGTGGGAATGGCTTTCCGACTACATCGGATAGAAGTAAATATAGCAATAGTGTTGGATTCATTTACGAGCCCCACAGAAAACTTTGTTTCTCTTCTGAAAACGTCTTGGAAAGTGGTACTACTGGAATATATTCATCCCATCTGCAGCCATCATTTTTTACATCTCAACCTCAAATTTTAGACGATGTTCCAAAACAAGGTGATGAAATAGTGGGACTGCTCTCCTCTGATAAATGTAAAAGGACAGTGTTTAATAATCATCTACATTCCCAGGAATATTGTCAGGAATTACTTGTGAAATCATCTTGCCAACGAGCCTCTGATCTACCCAGGTCCATAGACGCTAGCACTTCACATTTATAA 1305 39.16 MKRFANKQSTLFDHQNQINGIENQLLLRCGEIKRWESDQCTNYSQFSFKPVVGKCFDFILLKFSSSSIEHQNMAEIDIERILLEAKHRWLRPAEICEILKNYDKFSIASDPANMPPSGSLFLYDRKVVRYFRKDGHNWRKKKGKAVKEAHERLKAGSVYVLNCYYAHGEENENFQRRTYWMLEEDLSNIVLVHYREVQSSRGNFNRNRGTDEAALFSREFEDTKNRPEMGASNSSSFHPSNYKMLSQTAEISLNSAQVSEYEDAESEYGNRESTVFHSFLGLQQLKMESNSADLCDSKYSISLSDIYQEDFTAFGGNGFPTTSDRSKYSNSVGFIYEPHRKLCFSSENVLESGTTGIYSSHLQPSFFTSQPQILDDVPKQGDEIVGLLSSDKCKRTVFNNHLHSQEYCQELLVKSSCQRASDLPRSIDASTSHL 434
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 20919638 20925574 - CrPI670011_10g010600.1 Cre10g1060 510362

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre10g1060 434 ProSiteProfiles CG-1 DNA-binding domain profile. 78 203 IPR005559 GO:0003677(InterPro)
Cre10g1060 434 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 77 385 - GO:0003690(PANTHER)|GO:0003712(PANTHER)|GO:0005634(PANTHER)|GO:0006357(PANTHER)
Cre10g1060 434 Pfam CG-1 domain 84 196 IPR005559 GO:0003677(InterPro)
Cre10g1060 434 SMART CG_1_2 81 198 IPR005559 GO:0003677(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre10g1060 K21596 - - cit:102621892 357.451
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cre10g1059 . 36 635 CAMTA Transcription Factor Family AT2G22300 53.1 7.5e-167 585.1
Cre09g1559 . 1 1101 CAMTA Transcription Factor Family AT5G64220 54.0 5.6e-277 951.0
Cre10g1060 . 76 212 CAMTA Transcription Factor Family AT5G64220 71.7 3.5e-53 207.6
Cre06g0984 . 6 924 CAMTA Transcription Factor Family AT1G67310 52.3 2.2e-254 875.9
Cre06g1228 . 34 906 CAMTA Transcription Factor Family AT3G16940 55.1 8.3e-260 893.6
Cre06g1228 . 11 631 CAMTA Transcription Factor Family AT4G16150 53.8 4.9e-192 668.7
Cre09g1559 . 1 1101 CAMTA Transcription Factor Family AT5G64220 54.0 5.6e-277 951.0
Cre10g1060 . 76 212 CAMTA Transcription Factor Family AT5G64220 71.7 3.5e-53 207.6
Cre10g1059 . 36 635 CAMTA Transcription Factor Family AT2G22300 53.1 7.5e-167 585.1
Cre06g0984 . 6 924 CAMTA Transcription Factor Family AT1G67310 52.3 2.2e-254 875.9
Cre06g1228 . 11 631 CAMTA Transcription Factor Family AT4G16150 53.8 4.9e-192 668.7
Cre06g1228 . 34 906 CAMTA Transcription Factor Family AT3G16940 55.1 8.3e-260 893.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006128 0 6 0 0 0 2 1 1 2 0 1 1 1 0 0 1 2 2 1 2 0 1 1 1 3 0 1 3 5 0 38