Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre10g1081 ATGATGAAGCTGCAAACATATGCGGGGATTAGTTTCATTGCAACCATAGTGGTTATCTATCATGCCTTCAACAGTAGAGGGCAGTTTTACCCAGCATTGGTCTATTTATCGACTTCCAAGATAAATCTAGTGCTTCTTCTCAATATGGGTTTAGTGATCATGTGCATTTTGTGGCAGCTAACAAAAAAAATATTTCTCGGTTCTCTTAGAGAAGCAGAAGTTGAGAGGCTCAACGAGCAATCATGGAAGGAGTTGATGGAAATCCTCTTTGCCATCACTATTTTCCGCCAAGATTTTTCTGTTGCATTCCTGGGTATGGTTACAGCTCTGTTGTTGATCAAAGCTCTGCATTGGCTGGCTCAGAAGAGGGTTGAATACATGGAAACCACTCCATCGGTGCCGTTGTTGTCTCATATCCGGATAGTTTCTTTCTTAGGCTTCCTCTTTGTTCTAGATAGTCTGTTTTTTTATAATTCGATAGAATCTCTGATACAGACAAAGAAGGCCTCGGTTTCCCTCTTCTTTTCATTTGAGTATATGATTCTTGCGACGACAGCTGTGTCAACATTTGTAAAATATATTTTCTATGTTAGTGATGTGCTCATGGAGGGACAATGGGAAAGGAAGCCCGTCTATACATTTTACTTGGAGCTTATCCGGGACTTGCTTCACTTGTCGATGTACTTGTGTTTCTTTCTTGTGATTTTCATGACTTATGGTGTGCCTTTGCACTTGATCCGAGAGCTCTATGAGATCTTTAGGAATTTTAGGATTCGCATTGCAGATTACGTCCGTTATAGAAAGATCACTTCAAATATGAATGATCGCTTTCCAGATGCAACGCCAGAAGAACTCAATTCAAGTGATGCAACATGCATTATTTGTCGTGAAGAGATGACAGTTGCAAAGAAACTAGTATGTGGACATCTTTTTCATGTGCATTGCCTCCGATCCTGGTTGGAGCGACAGCATACTTGTCCCACTTGCAGAGCCCTTGTTGTACCACCTGAAGGTTCAAGCGGAGCAGGCGGTCATCATGGAGTGCAGTCTGATGCTAACCAACAAGGAACAGGAACTACTAGTTCATCTGCACAAGGTACCAGTGGTACGGGTGCTGCTAATGATAATTTGAGTCGTCATCAGGCTAGAGTCCGAGCTGCTGCAGCAGCTGCTTCAATATATGAGAAATCATATGTTTATCCTTTTGCGAGCACATTAGTATGGTCTCCTGGATATGCAATAGTTCCTCAGGTTGAAAGACCTATGCCTGACTCCATCAATACAGAAACGAATGGAGAACAAGCTCCCAATGGACATCCACAATACTTTTCATTTCCTGGCGGCCCTTCAAACCTATCCTTCACTCAATTTCCCCAAAATCTCTTTGTTCCTTTTCAGCCACGAGAGGGCACTGGAAACAATACAGATGGATTGGGCAGTAGTCTAAATGTAGGCTCACAGCTTGAAGCTCAAGAAAGATTTCTTCAACAACAGATTGAGATCCTTCAGAATCAGCTGCAACTTCTCCGTAAACCAAAAATTGAGGAAAACTCAAGAGCAAATGAAGCAGATAAGAAAGGGAAAAGCGTAACATCCTCTGCACCATCATCGTCTTCATCAGATTCTCATCGGCCTGGAGAAACCGAAAGTCCGGTGAGATAG 1662 42.48 MMKLQTYAGISFIATIVVIYHAFNSRGQFYPALVYLSTSKINLVLLLNMGLVIMCILWQLTKKIFLGSLREAEVERLNEQSWKELMEILFAITIFRQDFSVAFLGMVTALLLIKALHWLAQKRVEYMETTPSVPLLSHIRIVSFLGFLFVLDSLFFYNSIESLIQTKKASVSLFFSFEYMILATTAVSTFVKYIFYVSDVLMEGQWERKPVYTFYLELIRDLLHLSMYLCFFLVIFMTYGVPLHLIRELYEIFRNFRIRIADYVRYRKITSNMNDRFPDATPEELNSSDATCIICREEMTVAKKLVCGHLFHVHCLRSWLERQHTCPTCRALVVPPEGSSGAGGHHGVQSDANQQGTGTTSSSAQGTSGTGAANDNLSRHQARVRAAAAAASIYEKSYVYPFASTLVWSPGYAIVPQVERPMPDSINTETNGEQAPNGHPQYFSFPGGPSNLSFTQFPQNLFVPFQPREGTGNNTDGLGSSLNVGSQLEAQERFLQQQIEILQNQLQLLRKPKIEENSRANEADKKGKSVTSSAPSSSSSDSHRPGETESPVR 553
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 21392257 21399447 + CrPI670011_10g010810.1 Cre10g1081 510383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre10g1081 553 CDD RING-H2_synoviolin 289 330 - -
Cre10g1081 553 MobiDBLite consensus disorder prediction 346 375 - -
Cre10g1081 553 PANTHER RING ZINC FINGER PROTEIN 2 337 IPR050731 -
Cre10g1081 553 Coils Coil 485 505 - -
Cre10g1081 553 FunFam ERAD-associated E3 ubiquitin-protein ligase HRD1A 264 339 - -
Cre10g1081 553 SMART ring_2 292 329 IPR001841 -
Cre10g1081 553 Pfam Ring finger domain 291 330 IPR001841 -
Cre10g1081 553 ProSiteProfiles Zinc finger RING-type profile. 292 330 IPR001841 -
Cre10g1081 553 MobiDBLite consensus disorder prediction 512 526 - -
Cre10g1081 553 MobiDBLite consensus disorder prediction 509 553 - -
Cre10g1081 553 MobiDBLite consensus disorder prediction 527 545 - -
Cre10g1081 553 MobiDBLite consensus disorder prediction 340 375 - -
Cre10g1081 553 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 264 335 IPR013083 -
Cre10g1081 553 SUPERFAMILY RING/U-box 272 337 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre09g1306 Cre-Chr9:19177686 Cre10g1081 Cre-Chr10:21392257 3.70E-19 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre10g1081 K10601 - csv:101215351 973.385