Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre10g1082 ATGTCGGTGATGTTGGGTTCTTGCTCTTCTTCTCTGTGGATCATTTTCGTGTTGGGTTTTGTTTCCTTGCTCTCTGCTAATCCTGAAGGCGATGCTTTGAATGCATTGAAGTCAAATTTACAAGATCCCAACGGTGTACTACAGAGTTGGGATCCTACACTTGTTAACCCTTGCACATGGTTCCATGTCACCTGTGACAGTGAGAATAGTGTCACTCGAGTTGATCTTGGAAATGCCAATCTATCTGGCACGTTGGTTCCACAACTTGGTGATCTTAAGAATTTGCAATATCTGGAGCTTTACAGTAACAATATTAGTGGAGAAATTCCCTCGGAGCTTGGGCTTTTGACAAACTTGGTGAGCTTGGATCTTTACTTGAACAATTTAACTGGTCCCATACCATTCACACTTGGCGAGCTTGAAAAACTGCGTTTCCTGCGTCTTAACAACAACAGCTTATCGGGAACCATTCCAATGTCATTAACTAATGTTAAATCCTTGCAAGTCCTGGATCTGTCATACAACAAGCTATCTGGAGATATCCCGGTCAATGGTTCTTTTTCTCTTTTTACCCCTATCAGTTTTGCTCATAACCTTCTTAATGAATCTGCTGCACATACTCCACCACCTCCTCTACCTTCTTCACCAAGCCCTGTATCAGGCAATAGTGCCACTGGAGCTATTGCTGGTGGAGTTGCTGCTGCTGCTGCTTTACTGTTTGCTGCTCCTGCCGTTGCGGTTGCTCTGTGGCGTCGGAAGAAGCCACAAGATCATTTCTTTGATGTACCTGCCGAAGAGGATCCAGAAGTTCATCTTGGTCAGCTCAAGAGGTTCTCTCTTCGTGAACTACAAGTTGCAACGGATCATTTTAGCAACAAACATATTCTAGGGAGAGGTGGTTTTGGCAAGGTCTATAAGGGACGGCTGGCTGATGGATCTCTAGTGGCAGTTAAAAGACTCAAAGAGGAGCGTTCACAGGGTGGGGAGCTGCAATTTCAAACAGAAGTAGAGATGATCAGCATGGCTGTGCATCGTAATCTGCTCCGCCTGCGTGGCTTTTGTATGACACCAACTGAGCGGTTGTTGGTCTATCCATTTATGGTTAACGGAAGTGTAGCATCATGTTTGAGAGAACGCCGAGAAGCACAACCTCCACTTAATTGGTTGAATCGAAAACGCATTGCTTTGGGAGCTGCAAGGGGGCTTGCTTATCTACATGATCATTGTGATCCTAAGATTATTCATCGTGATGTGAAAGCTGCGAACATTTTACTTGACGAGGAGTATGAAGCTGTTGTTGGTGATTTTGGGTTGGCTAAACTCATGGACTACAAAGATACTCATGTCACAACTGCAGTACGAGGAACAATTGGGCATATAGCTCCTGAATACCTTTCGACTGGAAAGTCTTCTGAAAAGACTGATGTTTTTGGGTATGGGGTAATGCTTCTTGAACTCATAACTGGACAGAGGGCCTTTGATCTTGCCCGGCTTGCAAATGATGACGACGTCATGCTTCTTGATTGGGTGAAAGGACTTCTGAAAGACAAGAGGTTGGAAACACTAGTTGATCCCGATCTTGCGGGAAAATATCCCGACGACGAAGTCGAGCAGCTTATACAAGTTGCCTTGTTGTGCACACAAGGCACTCCTACAGAACGGCCTAAGATGTCAGAGGTTGTACGGATGCTTGAGGGTGATGGTTTAGCTGAAAGATGGGAAGAATGGCAGAAAGAGGAGCGGTTTCATCAAGACTTAAGCCGCAATCCCCACCCAAGTACGACTTGGATTCTCGACTCTACTGCTGAAATTCCTCCCGATGAATTGTCCGGTCCAAGATGA 1842 45.28 MSVMLGSCSSSLWIIFVLGFVSLLSANPEGDALNALKSNLQDPNGVLQSWDPTLVNPCTWFHVTCDSENSVTRVDLGNANLSGTLVPQLGDLKNLQYLELYSNNISGEIPSELGLLTNLVSLDLYLNNLTGPIPFTLGELEKLRFLRLNNNSLSGTIPMSLTNVKSLQVLDLSYNKLSGDIPVNGSFSLFTPISFAHNLLNESAAHTPPPPLPSSPSPVSGNSATGAIAGGVAAAAALLFAAPAVAVALWRRKKPQDHFFDVPAEEDPEVHLGQLKRFSLRELQVATDHFSNKHILGRGGFGKVYKGRLADGSLVAVKRLKEERSQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPFMVNGSVASCLRERREAQPPLNWLNRKRIALGAARGLAYLHDHCDPKIIHRDVKAANILLDEEYEAVVGDFGLAKLMDYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGVMLLELITGQRAFDLARLANDDDVMLLDWVKGLLKDKRLETLVDPDLAGKYPDDEVEQLIQVALLCTQGTPTERPKMSEVVRMLEGDGLAERWEEWQKEERFHQDLSRNPHPSTTWILDSTAEIPPDELSGPR 613
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 21439598 21447637 + CrPI670011_10g010820.1 Cre10g1082 510384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre10g1082 613 ProSitePatterns Protein kinases ATP-binding region signature. 296 318 IPR017441 GO:0005524(InterPro)
Cre10g1082 613 FunFam Somatic embryogenesis receptor kinase 1 25 212 - -
Cre10g1082 613 Gene3D Transferase(Phosphotransferase) domain 1 367 584 - -
Cre10g1082 613 ProSiteProfiles Protein kinase domain profile. 290 577 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre10g1082 613 SUPERFAMILY L domain-like 28 203 - -
Cre10g1082 613 Gene3D Ribonuclease Inhibitor 26 206 IPR032675 -
Cre10g1082 613 Pfam Leucine Rich Repeat 166 183 IPR001611 GO:0005515(InterPro)
Cre10g1082 613 Pfam Leucine Rich Repeat 94 114 IPR001611 GO:0005515(InterPro)
Cre10g1082 613 Pfam Leucine Rich Repeat 142 163 IPR001611 GO:0005515(InterPro)
Cre10g1082 613 Pfam Leucine Rich Repeat 118 140 IPR001611 GO:0005515(InterPro)
Cre10g1082 613 ProSiteProfiles Leucine-rich repeat profile. 94 116 IPR001611 GO:0005515(InterPro)
Cre10g1082 613 Pfam Protein tyrosine and serine/threonine kinase 293 564 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre10g1082 613 SMART serkin_6 290 564 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre10g1082 613 SUPERFAMILY Protein kinase-like (PK-like) 269 565 IPR011009 -
Cre10g1082 613 FunFam Somatic embryogenesis receptor-like kinase 1 367 584 - -
Cre10g1082 613 Gene3D Phosphorylase Kinase; domain 1 259 366 - -
Cre10g1082 613 Pfam Leucine rich repeat N-terminal domain 27 66 IPR013210 -
Cre10g1082 613 ProSitePatterns Serine/Threonine protein kinases active-site signature. 413 425 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre10g1082 613 FunFam Somatic embryogenesis receptor kinase 1 259 366 - -
Cre10g1082 613 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 8 613 - -
Cre10g1082 613 MobiDBLite consensus disorder prediction 580 613 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g1024 Cre-Chr2:7890794 Cre10g1082 Cre-Chr10:21439598 4.90E-31 dispersed
Cre06g0948 Cre-Chr6:2915625 Cre10g1082 Cre-Chr10:21439598 1.70E-29 dispersed
Cre08g0278 Cre-Chr8:7409007 Cre10g1082 Cre-Chr10:21439598 2.40E-227 dispersed
Cre09g1509 Cre-Chr9:30392926 Cre10g1082 Cre-Chr10:21439598 8.00E-201 dispersed
Cre10g1082 Cre-Chr10:21439598 Cre11g0996 Cre-Chr11:7251364 3.20E-131 dispersed
Cre10g1082 Cre-Chr10:21439598 Cre07g2068 Cre-Chr7:36241445 9.30E-123 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64462 PF00069 Pkinase 2.30E-44 CL0016 Cre PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre10g1082 K13416 - csv:101216389 1127.85