Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre10g1094 ATGGATAACTTATGCTGCTTCAATTCTGTCTATTCTCAGTTTGTAGGAGGACGTTCGTCATGTAGCTCTGGAAAGGGCAGGGGCAATTTATGCCCTGCTAGGTATGGCTTTAGCCTAGTAAAAGGCAAAGCAAATCATCCCATGGAGGACTATCATGTTGCTAAATTTATTACCGTGCATGGCCGGGAGCTAGGCCTTTTTGCTATATATGATGGACATTTAGGAGATAGCGTACCTGCCTATCTACAGAAGCATCTATTTCCTAATATACTGAAGGATGAGGAATTCTGGTCGAATCCCGGTAGCTCTATCTTTAAGGCTTACGAGAAGACAGACCAAGCAATACTCTCACACAGTCCTGACTTAGGAAGAGGTGGATCCACCGCTGTCACTGCAATTTTGATAAACGGTCAGAAATTATGGGTGGCTAATGTTGGAGATTCACGTGCAGTCCTTTCGAAAAAAGGGCAGGAGGTGCAAATGTCTATTGATCACGAGCCAAACACCGAGCGAGGAAGTATTGAGGACAGAGGTGGCTTTGTCTCTAACATGCCAGGAGATGTTGCAAGAGTGAATGGGCAGCTTGCAGTTTCTCGAGCATTTGGCGACAAGAACCTCAAGACACACTTGCGATCTGATCCTGACATAACAAATGCCGATGTTGACTCTGACACTGAGCTTCTTATCTTAGCAAGTGATGGTCTATGGAAGGTCATGTCAAATCAAGAAGCCGTGGATATAGCAAGAAAAACCAAGGATCCCCAGAGAGCAGCAAAGCAATTAGCAGCAGAAGCACTGAAAAGGGAAAGCAAAGACGACATCTCAATCATCGTAGTTCGTTTCAAAGGGTAA 852 44.84 MDNLCCFNSVYSQFVGGRSSCSSGKGRGNLCPARYGFSLVKGKANHPMEDYHVAKFITVHGRELGLFAIYDGHLGDSVPAYLQKHLFPNILKDEEFWSNPGSSIFKAYEKTDQAILSHSPDLGRGGSTAVTAILINGQKLWVANVGDSRAVLSKKGQEVQMSIDHEPNTERGSIEDRGGFVSNMPGDVARVNGQLAVSRAFGDKNLKTHLRSDPDITNADVDSDTELLILASDGLWKVMSNQEAVDIARKTKDPQRAAKQLAAEALKRESKDDISIIVVRFKG 283
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 21739945 21743805 + CrPI670011_10g010940.1 Cre10g1094 510396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre10g1094 283 PANTHER PROTEIN PHOSPHATASE 34 279 IPR015655 GO:0004722(PANTHER)|GO:0004722(InterPro)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Cre10g1094 283 SMART PP2C_SIG_2 45 281 IPR001932 -
Cre10g1094 283 SMART PP2C_4 30 279 IPR001932 -
Cre10g1094 283 FunFam Probable protein phosphatase 2C 39 26 282 - -
Cre10g1094 283 SUPERFAMILY PP2C-like 30 282 IPR036457 -
Cre10g1094 283 CDD PP2Cc 34 281 IPR001932 -
Cre10g1094 283 ProSiteProfiles PPM-type phosphatase domain profile. 34 281 IPR001932 -
Cre10g1094 283 Gene3D - 30 283 IPR036457 -
Cre10g1094 283 Pfam Protein phosphatase 2C 43 274 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre06g1473 Cre-Chr6:9297388 Cre10g1094 Cre-Chr10:21739945 6.50E-20 dispersed
Cre10g1094 Cre-Chr10:21739945 Cre11g2195 Cre-Chr11:33662839 6.00E-85 dispersed
Cre10g1094 Cre-Chr10:21739945 Cre11g1835 Cre-Chr11:29988373 7.60E-120 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre10g1094 K17506 - csv:101214223 547.354