Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre10g1109 ATGGCTTTTACGAGCCTCTCTTTCCATTCTACAACACCCATTTCTCATCTTCAACGATGGAAAGACCTCCAAGCTTTTGCAGCCATCGACAACCATGTGAAACCCTATACCACAACGGTTCTTGGTCCTGCTTCCAAAGTCCTCTCCATCATCAAACCTTCTAAACTCTATCTAACCACCAACCGCTTCGTCCGAGATGGAGCTATCAGATCTTCAAATTCTAATGTCGATGTCGATGTCACCATTGCCAACGATACCATCTTTGGCATCAATGGCCAGCCAATATTTTCGGTTGATGAGCCTGACTTGGACCGTCCGACGGAAGGGTTTTCGTCCATTGAGGAAGCTATTGAAGATGTTCGGAAGGGAAAGATGGTGGTGGTTGTTGACGATGAAGATCGAGAAAACGAAGGAGATCTTATAATGGCGGCTGAGGCGGTGACGACAGAGGCGATGGCTTTCATTGTAAAGCATGGAACGGGGATTGTTTGTGTGGGGATGAAAGGAGAAGATTTAGAGAGGTTACAGATTCCATTAATGGTGGATCACAAGGATAACCAAGAAATGCTCTCTACTGCTTTTACCATCACTGTGGATGGAAGAGAGGGCACAACGACGGGAGTTTCAGCGGAGGATAGGGTGGCGACGGTGGTGGCATTGGCATCAAAACACTCAATACCATATGATTTTAAACGACCGGGTCATATCTTTCCCCTCAAATATAGAGAAGGAGGGGTTTTGAGAAGGCCTGGCCACACGGAAGCCTCCGTCGATCTAGCAGAGCTTGCTGGACTCTTTCCCGCCGGAATTCTCTGTGAGATCGTCGACGACGATGGCTCCATGGCTAGGCTCCCAAAGCTTCGCCAGTTTGCTCAACATCATAGCCTCAAAATTATCTCCATTGCTGACTTGATCAGGTATAGGAGAAAGAGGGAGAAATTAATTGAGCGCATTGGAGATCCTACAAGGATTCCGACTTCATGGGGACCATTCAATGCATATTGTTACAAGTCTACATTAGATGGCATGGAACATATCGCAATGGTTAAGGGTAATATTGGTGATGGCGAAGAGATCTTAGTGAGGGTGCACTCAGAATGCTTGACAGGAGACATATTTGGATCAGCAAGATGTGACTGTGGAAAGCAACTAGGTTTGGCAATGCGAAAGATTGAGGAAGGTGGGAAAGGAGTGTTGGTTTATCTTAGAGGCCAAGAAGGAAGAGGCATTGGTTTGGGCAATAAGCTTCTTGCATATAATTTACAAGATGCTGGTAGAGACACTGTTCAAGCTAATCAAGATTTGGGATTGCCTGTTGATTCTAGAGATTATACCCTCGCTGCACAAATTATAAAGGATCTTGGGGTGAGAACAATGAGGCTAATGACAAATAACCCAGCAAAGTACATGGGGTTAAAGGGGTATGGGTTGGCAATTTCAGGCAGAGTTCCTCTTGTAACCCCAATTACAAAGGAAAATAAAAGATACCTTGAGACTAAGAGAGCCAAAATGGGTCATGACTATGGCTTAGAATTCAATGGTGTGTTAAGTGCTCTAATGAATGTCAATACAAAATAA 1578 44.87 MAFTSLSFHSTTPISHLQRWKDLQAFAAIDNHVKPYTTTVLGPASKVLSIIKPSKLYLTTNRFVRDGAIRSSNSNVDVDVTIANDTIFGINGQPIFSVDEPDLDRPTEGFSSIEEAIEDVRKGKMVVVVDDEDRENEGDLIMAAEAVTTEAMAFIVKHGTGIVCVGMKGEDLERLQIPLMVDHKDNQEMLSTAFTITVDGREGTTTGVSAEDRVATVVALASKHSIPYDFKRPGHIFPLKYREGGVLRRPGHTEASVDLAELAGLFPAGILCEIVDDDGSMARLPKLRQFAQHHSLKIISIADLIRYRRKREKLIERIGDPTRIPTSWGPFNAYCYKSTLDGMEHIAMVKGNIGDGEEILVRVHSECLTGDIFGSARCDCGKQLGLAMRKIEEGGKGVLVYLRGQEGRGIGLGNKLLAYNLQDAGRDTVQANQDLGLPVDSRDYTLAAQIIKDLGVRTMRLMTNNPAKYMGLKGYGLAISGRVPLVTPITKENKRYLETKRAKMGHDYGLEFNGVLSALMNVNTK 525
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 22245421 22251841 + CrPI670011_10g011090.1 Cre10g1109 510411

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre10g1109 525 Hamap GTP cyclohydrolase-2 [ribA]. 313 510 IPR000926 GO:0003935(InterPro)|GO:0009231(InterPro)
Cre10g1109 525 Hamap 3,4-dihydroxy-2-butanone 4-phosphate synthase [ribB]. 108 312 IPR000422 GO:0008686(InterPro)|GO:0009231(InterPro)
Cre10g1109 525 Pfam 3,4-dihydroxy-2-butanone 4-phosphate synthase 114 307 IPR000422 GO:0008686(InterPro)|GO:0009231(InterPro)
Cre10g1109 525 SUPERFAMILY RibA-like 315 486 IPR036144 -
Cre10g1109 525 Gene3D GTP cyclohydrolase II 316 487 IPR036144 -
Cre10g1109 525 NCBIfam 3,4-dihydroxy-2-butanone-4-phosphate synthase 110 308 IPR000422 GO:0008686(InterPro)|GO:0009231(InterPro)
Cre10g1109 525 FunFam Riboflavin biosynthesis protein RibBA 317 487 - -
Cre10g1109 525 CDD GTP_cyclohydro2 314 507 IPR000926 GO:0003935(InterPro)|GO:0009231(InterPro)
Cre10g1109 525 PANTHER GTP CYCLOHYDROLASE II-RELATED 110 506 - GO:0008686(PANTHER)|GO:0009231(PANTHER)|GO:0009507(PANTHER)
Cre10g1109 525 Pfam GTP cyclohydrolase II 322 484 IPR032677 -
Cre10g1109 525 FunFam Bifunctional riboflavin biosynthesis protein RIBA 1 chloroplastic 101 314 - -
Cre10g1109 525 NCBIfam GTP cyclohydrolase II 322 506 IPR000926 GO:0003935(InterPro)|GO:0009231(InterPro)
Cre10g1109 525 SUPERFAMILY YrdC/RibB 109 312 IPR017945 -
Cre10g1109 525 Hamap Riboflavin biosynthesis protein RibBA [ribBA]. 109 506 IPR016299 GO:0009231(InterPro)
Cre10g1109 525 Gene3D DHBP synthase 101 315 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre10g1109 K14652 - - csv:101212510 724.546
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre10g1109 Cre-Chr10:22245421 Cre10g1110 Cre-Chr10:22331187 2.90E-189 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g978 . . . . . . . . . . . . . . . . . . . . . . . . Cla10g00895 Cam10g0919 Cec10g0957 Cco10g0917 Clacu10g0948 Cmu10g1733 Cre10g1109 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000665 2 1 3 4 3 3 2 3 3 3 3 3 4 3 3 3 3 5 3 3 3 3 3 4 4 3 2 7 7 3 99