Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre10g1125 ATGGCAAAAAAGGATGTGATTGGGTACGAGGCAAAAATCCAGAAGGACAACATAGAAATACACGAGGTGGAAAATAAATTTTGGGAGGAAAAAAGGGGAAAAAAAATGACAAGACAAAAAATCCAGATAAAGAAAATAGACAACATAGCAGCAAGGCAAGTGACATTTTCAAAGAGGAGAAGAGGACTATTCAAAAAAGCTCATGAACTTGCAACTCTCTGTGATGCTGATATTGCTCTCATTGTTTTTTCTGCTTCTGGAAAGCTTTTTGATTATTCCAGCTCAAGCATGCTGGAGTTATTGAGAAGACATAATATGCTACCAGAGTTGAGTAACTTTAGTCAACCTCCATCTCAGGGTTCACAGTTGGAAAAGAGTGCCCATGCTAAATTGACTGAGGAATTTGCAGCCAAGACCAAAGAACTTAGGCATATGAAGGGAGAGGAGCTTCAAGGGCTTGGAATAGAAGAATTAAAGAAATTGGAGAAATTGCTTGAGATTGGTTTGAATCGTGTAGTAGAGACCAAGGATGAAAAGTTTCTTAAAGAGATTGGTGCTGTGAAGGAGAAGGAAGCTTTGCTAATGGAAGAGAATCAGAGACTGAGGAATAAAATGGAAACTTTGAATAGAGATCAGCAAGAAGAACAAGCAGTGGTTGTTATTGGTGGAAATTCTTTGGGGTCAAAGTCAAACACCACCAACAGCAGCTCCTCACCAAACCCTAATTCTCAAGATTATGATGACATTTCTCTTAAATTGGGTCTTTGA 768 38.67 MAKKDVIGYEAKIQKDNIEIHEVENKFWEEKRGKKMTRQKIQIKKIDNIAARQVTFSKRRRGLFKKAHELATLCDADIALIVFSASGKLFDYSSSSMLELLRRHNMLPELSNFSQPPSQGSQLEKSAHAKLTEEFAAKTKELRHMKGEELQGLGIEELKKLEKLLEIGLNRVVETKDEKFLKEIGAVKEKEALLMEENQRLRNKMETLNRDQQEEQAVVVIGGNSLGSKSNTTNSSSSPNPNSQDYDDISLKLGL 255
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 23271488 23279480 + CrPI670011_10g011250.1 Cre10g1125 510427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre10g1125 255 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 45 92 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cre10g1125 255 PANTHER SERUM RESPONSE FACTOR HOMOLOG 36 237 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Cre10g1125 255 Gene3D - 50 143 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cre10g1125 255 ProSiteProfiles K-box domain profile. 121 211 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Cre10g1125 255 Coils Coil 184 218 - -
Cre10g1125 255 Coils Coil 158 178 - -
Cre10g1125 255 SMART madsneu2 36 95 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cre10g1125 255 Pfam K-box region 123 206 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Cre10g1125 255 PRINTS MADS domain signature 58 73 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cre10g1125 255 PRINTS MADS domain signature 38 58 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cre10g1125 255 PRINTS MADS domain signature 73 94 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cre10g1125 255 CDD MADS_MEF2_like 38 104 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Cre10g1125 255 MobiDBLite consensus disorder prediction 223 247 - -
Cre10g1125 255 ProSitePatterns MADS-box domain signature. 38 92 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cre10g1125 255 ProSiteProfiles MADS-box domain profile. 36 96 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cre10g1125 255 SUPERFAMILY SRF-like 37 116 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cre10g1125 255 MobiDBLite consensus disorder prediction 222 255 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre04g2054 Cre-Chr4:37753251 Cre10g1125 Cre-Chr10:23271488 1.80E-11 dispersed
Cre08g1110 Cre-Chr8:24270314 Cre10g1125 Cre-Chr10:23271488 1.30E-45 dispersed
Cre10g1125 Cre-Chr10:23271488 Cre11g2015 Cre-Chr11:31927543 4.70E-20 dispersed
Cre09g1620 Cre-Chr9:33150933 Cre10g1125 Cre-Chr10:23271488 1.00E-23 transposed
Cre10g1125 Cre-Chr10:23271488 Cre04g1458 Cre-Chr4:33353671 5.90E-47 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54520 PF01486 K-box 8.60E-16 No_clan Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre10g1125 - - - 0.0